Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IDAEBGAD_4 | 30747 | 30043 | WalR | 3.27e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| IDAEBGAD_22 | 173884 | 173690 | CspR | 1.89e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| IDAEBGAD_22 | 173884 | 173687 | CspA | 2.90e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IDAEBGAD_12 | 11523 | 12082 | rep38 | 565 / 903 | 87.26 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IDAEBGAD_1 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_2 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_3 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_4 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_5 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_6 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_7 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_8 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_9 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_10 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_11 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_12 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_13 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_14 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_15 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_16 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_17 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_18 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_19 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_20 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_22 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_23 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_24 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_25 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_26 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_27 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_29 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_30 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_31 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_32 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_33 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_34 | 1.0 | 0.0 | 1.0 |
| IDAEBGAD_43 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_54 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_65 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_75 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_76 | 0.0 | 1.0 | 0.0 |
| IDAEBGAD_77 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IDAEBGAD_10 | 2874 | 22934 | False | Siphoviridae | VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG0083, VOG4605, VOG4599 |
| IDAEBGAD_54 | 88826 | 100616 | False | Siphoviridae | VOG11003, VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)