Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LMMABDEC_77 | 28895 | 28191 | WalR | 1.12e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LMMABDEC_110 | 21953 | 22150 | CspR | 1.28e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMMABDEC_1 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_2 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_4 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_5 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_6 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_7 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_8 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_9 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_10 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_11 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_12 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_13 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_14 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_15 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_16 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_17 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_19 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_20 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_21 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_22 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_23 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_24 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_25 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_26 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_28 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_30 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_31 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_32 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_33 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_34 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_35 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_36 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_37 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_38 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_39 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_40 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_42 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_44 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_46 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_47 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_48 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_49 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_50 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_51 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_52 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_53 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_54 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_55 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_56 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_57 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_58 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_59 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_60 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_61 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_62 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_63 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_64 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_65 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_66 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_67 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_68 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_69 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_70 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_71 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_72 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_73 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_74 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_75 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_76 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_77 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_78 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_79 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_80 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_81 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_82 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_83 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_84 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_85 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_86 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_87 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_88 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_89 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_90 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_91 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_92 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_93 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_94 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_95 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_96 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_97 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_98 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_99 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_100 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_101 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_102 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_103 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_104 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_105 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_106 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_107 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_108 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_109 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_110 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_111 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_112 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_113 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_114 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_115 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_116 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_117 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_118 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_119 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_120 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_121 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_122 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_123 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_124 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_125 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_126 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_127 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_128 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_130 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_131 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_132 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_133 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_134 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_135 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_136 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_137 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_138 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_139 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_140 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_141 | 1.0 | 0.0 | 1.0 |
| LMMABDEC_142 | 0.0 | 1.0 | 0.0 |
| LMMABDEC_143 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMMABDEC_77 | 95436 | 105391 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4553, VOG0204 |
| LMMABDEC_88 | 39889 | 74675 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG0226, VOG9860, VOG0536, VOG9741, VOG0195, VOG2820, VOG3643, VOG0044, VOG3307, VOG0198, VOG4570, VOG0796, VOG4544, VOG0720, VOG4564, VOG5616, VOG1300, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0602, VOG4649 |
| LMMABDEC_99 | 68902 | 97074 | False | Siphoviridae | VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG0198, VOG5562, VOG6795, VOG5998, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG4967, VOG1302, VOG10867 |
Phigaro v2.4.0 (Database: Jan. 2024 release)