Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MEIMGHMH_226 | 6400 | 5696 | WalR | 4.74e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| MEIMGHMH_203 | 13816 | 14013 | CspR | 5.45e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MEIMGHMH_1 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_2 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_3 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_4 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_5 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_6 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_7 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_8 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_9 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_10 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_11 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_12 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_13 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_14 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_15 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_16 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_17 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_19 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_20 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_21 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_22 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_23 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_24 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_25 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_26 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_28 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_30 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_31 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_32 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_33 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_34 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_35 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_36 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_37 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_38 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_39 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_40 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_42 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_43 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_44 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_45 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_46 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_47 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_48 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_49 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_50 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_61 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_70 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_80 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_91 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_102 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_103 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_114 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_125 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_136 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_147 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_158 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_166 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_167 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_168 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_169 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_170 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_171 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_172 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_173 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_174 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_175 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_176 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_177 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_178 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_179 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_180 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_181 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_182 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_183 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_184 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_185 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_186 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_187 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_188 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_189 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_190 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_191 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_192 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_193 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_194 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_195 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_196 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_197 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_198 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_199 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_200 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_201 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_202 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_203 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_204 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_205 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_206 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_207 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_208 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_209 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_210 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_211 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_212 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_213 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_214 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_215 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_216 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_217 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_218 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_219 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_220 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_221 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_222 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_223 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_224 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_225 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_226 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_227 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_228 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_229 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_230 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_231 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_232 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_233 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_234 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_235 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_236 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_237 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_238 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_239 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_240 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_241 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_242 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_243 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_244 | 0.0 | 1.0 | 0.0 |
| MEIMGHMH_245 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_246 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_247 | 1.0 | 0.0 | 1.0 |
| MEIMGHMH_248 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MEIMGHMH_166 | 599 | 20858 | False | Siphoviridae | VOG6947, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG10303, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG4605, VOG4599, VOG4599, VOG4705 |
| MEIMGHMH_171 | 78960 | 114128 | False | Siphoviridae | VOG4649, VOG4649, VOG0602, VOG7017, VOG0861, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG9583, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG1183, VOG5616, VOG4564, VOG0720, VOG10227, VOG3699, VOG4570, VOG0198, VOG0044, VOG5733, VOG3643, VOG0152, VOG9759, VOG0327, VOG4606, VOG6545, VOG4548, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG0807, VOG6463 |
Phigaro v2.4.0 (Database: Jan. 2024 release)