Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 2 | 16.52 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KHDKLOGA_1 | 3300518 | 3300835 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| KHDKLOGA_1 | 3300180 | 3300518 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| KHDKLOGA_1 | 2839582 | 2842152 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| KHDKLOGA_1 | 2537282 | 2538928 | vmlR | ARO:3004476 | vmlR | 99.27 | 100.18 | NC_000964.3 |
| KHDKLOGA_1 | 2286755 | 2287348 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| KHDKLOGA_1 | 2236260 | 2237693 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| KHDKLOGA_1 | 2223446 | 2224366 | mphK | ARO:3004541 | mphK | 99.01 | 100.00 | CP010314.1 |
| KHDKLOGA_1 | 449349 | 450203 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
| KHDKLOGA_1 | 432269 | 433471 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
| KHDKLOGA_1 | 415003 | 415857 | aadK | ARO:3002627 | aadK | 88.73 | 100.00 | AL009126.1 |
| KHDKLOGA_1 | 229191 | 230360 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KHDKLOGA_1 | 2223446 | 2224366 | mph(K) | Spiramycin, Telithromycin | 99.13 | 100.00 | NC_000964 |
| KHDKLOGA_1 | 449349 | 450203 | aadK | Streptomycin | 98.48 | 100.00 | M26879 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KHDKLOGA_1 | 2537285 | 2538928 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 99.27 | 100.00 | WP_003234144.1 |
| KHDKLOGA_1 | 2223446 | 2224354 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.01 | 99.02 | WP_003246254.1 |
| KHDKLOGA_1 | 449352 | 450203 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| KHDKLOGA_1 | 1922276 | 1922794 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 91.91 | 100.00 | WP_003242546.1 |
| KHDKLOGA_1 | 415006 | 415857 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 88.73 | 100.00 | WP_003229862.1 |
| KHDKLOGA_1 | 4022919 | 4025516 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KHDKLOGA_1 | 31885 | 32526 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.84 | 100.00 | NP_390062 |
| KHDKLOGA_1 | 995621 | 996406 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.75 | 100.00 | NP_391080 |
| KHDKLOGA_1 | 1429999 | 1431180 | capB | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | NP_391471 |
| KHDKLOGA_1 | 994399 | 995595 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| KHDKLOGA_1 | 1429535 | 1429984 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| KHDKLOGA_1 | 1428374 | 1429516 | capA | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_391469 |
| KHDKLOGA_1 | 3968704 | 3970467 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| KHDKLOGA_1 | 984629 | 991765 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.43 | 100.00 | NP_391076 |
| KHDKLOGA_1 | 991785 | 992723 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391077 |
| KHDKLOGA_1 | 992751 | 994370 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.35 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KHDKLOGA_1 | 2083898 | 2085034 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| KHDKLOGA_1 | 3611926 | 3612702 | CodY | 3.32e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KHDKLOGA_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KHDKLOGA_1 | 3243585 | 3270668 | False | Myoviridae | VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705 |
| KHDKLOGA_1 | 3813786 | 3839560 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG5910, VOG6163, VOG0801, VOG4619, VOG4626, VOG3390, VOG4705, VOG4612, VOG3390, VOG7896, VOG0641 |
Phigaro v2.4.0 (Database: Jan. 2024 release)