Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKPBEIGB_2 | 81655 | 82860 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| PKPBEIGB_20 | 11231 | 13156 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PKPBEIGB_56 | 8049 | 8939 | CblA-1 | ARO:3002999 | CblA-1 | 97.64 | 100.00 | GQ343019.1 |
| PKPBEIGB_19 | 1150 | 2286 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| PKPBEIGB_55 | 185 | 1150 | CfxA5 | ARO:3003096 | CfxA5 | 99.69 | 100.00 | AY769934.1 |
| PKPBEIGB_19 | 137 | 937 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKPBEIGB_19 | 137 | 937 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| PKPBEIGB_19 | 1150 | 2316 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| PKPBEIGB_55 | 185 | 1150 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| PKPBEIGB_20 | 11231 | 13156 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKPBEIGB_19 | 137 | 934 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| PKPBEIGB_2 | 82885 | 83394 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PKPBEIGB_19 | 1153 | 2316 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| PKPBEIGB_55 | 185 | 1147 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | BLASTX | 99.69 | 100.00 | WP_032946415.1 |
| PKPBEIGB_20 | 11234 | 13156 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PKPBEIGB_2 | 81655 | 82857 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| PKPBEIGB_56 | 8049 | 8936 | cblA | CblA family class A beta-lactamase | BLASTX | 97.64 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PKPBEIGB_37 | 2016 | 2695 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKPBEIGB_1 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_2 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_3 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_4 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_5 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_6 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_7 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_8 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_9 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_10 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_11 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_12 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_13 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_14 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_15 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_16 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_17 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_18 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_19 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_20 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_21 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_22 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_23 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_24 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_25 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_26 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_27 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_28 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_29 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_30 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_31 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_32 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_33 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_35 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_36 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_37 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_38 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_39 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_40 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_41 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_42 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_43 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_44 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_45 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_46 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_47 | 1.0 | 0.0 | 1.0 |
| PKPBEIGB_48 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_52 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_53 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_54 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_55 | 0.0 | 1.0 | 0.0 |
| PKPBEIGB_56 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKPBEIGB_9 | 87563 | 102433 | False | Siphoviridae | VOG0025, |
Phigaro v2.4.0 (Database: Jan. 2024 release)