Probiotic potential risk score


ARGs VFs PGs PPRS
4004.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
GFBMOPMH_554649747633tet(X)ARO:3000205tet(X)99.7497.42M37699.1
GFBMOPMH_554532846284ErmFARO:3000498ErmF99.62119.55M17124.1
GFBMOPMH_102117721914ErmBARO:3000375ErmB98.7898.79AF242872.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
GFBMOPMH_554548446284erm(F)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S100.00100.00M17808
GFBMOPMH_554649747663tet(X)Doxycycline, Tetracycline, Minocycline, Tigecycline99.91100.00M37699
GFBMOPMH_102117721914erm(B)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S99.59100.00U18931
GFBMOPMH_102635627573mef(A)Erythromycin, Azithromycin94.99100.00AF227520

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
GFBMOPMH_554548446281erm(F)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)EXACTX100.00100.00WP_002682030.1
GFBMOPMH_554650047663tet(X2)tetracycline-inactivating monooxygenase Tet(X2)BLASTX99.74100.00WP_008651082.1
GFBMOPMH_102117721911erm(B)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)BLASTX99.18100.00WP_002292226.1
GFBMOPMH_102635627576mef(A)macrolide efflux MFS transporter Mef(A)INTERNAL_STOP98.5399.75WP_012102963.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GFBMOPMH_10.01.00.0
GFBMOPMH_20.01.00.0
GFBMOPMH_30.01.00.0
GFBMOPMH_40.01.00.0
GFBMOPMH_50.01.00.0
GFBMOPMH_60.01.00.0
GFBMOPMH_70.01.00.0
GFBMOPMH_80.01.00.0
GFBMOPMH_90.01.00.0
GFBMOPMH_100.01.00.0
GFBMOPMH_110.01.00.0
GFBMOPMH_120.01.00.0
GFBMOPMH_130.01.00.0
GFBMOPMH_140.01.00.0
GFBMOPMH_150.01.00.0
GFBMOPMH_160.01.00.0
GFBMOPMH_170.01.00.0
GFBMOPMH_180.01.00.0
GFBMOPMH_190.01.00.0
GFBMOPMH_200.01.00.0
GFBMOPMH_210.01.00.0
GFBMOPMH_220.01.00.0
GFBMOPMH_230.01.00.0
GFBMOPMH_240.01.00.0
GFBMOPMH_250.01.00.0
GFBMOPMH_261.00.01.0
GFBMOPMH_270.01.00.0
GFBMOPMH_280.01.00.0
GFBMOPMH_301.00.01.0
GFBMOPMH_311.00.01.0
GFBMOPMH_321.00.01.0
GFBMOPMH_330.01.00.0
GFBMOPMH_341.00.01.0
GFBMOPMH_351.00.01.0
GFBMOPMH_361.00.01.0
GFBMOPMH_371.00.01.0
GFBMOPMH_381.00.01.0
GFBMOPMH_391.00.01.0
GFBMOPMH_400.01.00.0
GFBMOPMH_411.00.01.0
GFBMOPMH_421.00.01.0
GFBMOPMH_430.01.00.0
GFBMOPMH_440.01.00.0
GFBMOPMH_451.00.01.0
GFBMOPMH_460.01.00.0
GFBMOPMH_471.00.01.0
GFBMOPMH_550.01.00.0
GFBMOPMH_560.01.00.0
GFBMOPMH_570.01.00.0
GFBMOPMH_580.01.00.0
GFBMOPMH_590.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
GFBMOPMH_10127932137833FalseSiphoviridaeVOG3691,
GFBMOPMH_13111910115885FalseUnknownVOG8904,
GFBMOPMH_22256317263097FalseSiphoviridaeVOG0204,
GFBMOPMH_25580913243FalseUnknownVOG0572,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements