Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNAMMEPN_71 | 78493 | 79383 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| LNAMMEPN_9 | 35947 | 37872 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LNAMMEPN_9 | 35947 | 37872 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNAMMEPN_9 | 35950 | 37872 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LNAMMEPN_71 | 78493 | 79380 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LNAMMEPN_50 | 967 | 1646 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LNAMMEPN_1 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_2 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_3 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_4 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_5 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_6 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_7 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_8 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_9 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_10 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_11 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_12 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_13 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_14 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_15 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_16 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_17 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_18 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_19 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_20 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_21 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_22 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_23 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_24 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_25 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_26 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_27 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_28 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_29 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_30 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_31 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_32 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_33 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_34 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_35 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_36 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_37 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_38 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_39 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_40 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_41 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_42 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_43 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_44 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_45 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_46 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_47 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_48 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_49 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_50 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_52 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_54 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_55 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_56 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_57 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_58 | 1.0 | 0.0 | 1.0 |
| LNAMMEPN_66 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_70 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_71 | 0.0 | 1.0 | 0.0 |
| LNAMMEPN_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LNAMMEPN_55 | 90181 | 98506 | False | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)