Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IHJFEKAP_20 | 31030 | 32955 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
| IHJFEKAP_13 | 12181 | 13317 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| IHJFEKAP_13 | 11012 | 11968 | ErmF | ARO:3000498 | ErmF | 99.62 | 119.55 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IHJFEKAP_13 | 11168 | 11968 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| IHJFEKAP_13 | 12181 | 13347 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| IHJFEKAP_20 | 31030 | 32955 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IHJFEKAP_13 | 11168 | 11965 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| IHJFEKAP_13 | 12184 | 13347 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| IHJFEKAP_20 | 31033 | 32955 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IHJFEKAP_1 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_2 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_3 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_4 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_5 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_6 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_7 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_8 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_9 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_10 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_11 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_12 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_13 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_14 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_15 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_16 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_17 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_18 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_19 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_20 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_21 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_22 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_23 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_24 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_25 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_26 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_27 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_28 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_29 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_30 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_31 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_32 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_33 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_34 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_35 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_36 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_37 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_38 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_39 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_40 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_41 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_42 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_43 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_44 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_45 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_46 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_47 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_48 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_49 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_50 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_51 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_52 | 1.0 | 0.0 | 1.0 |
| IHJFEKAP_53 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_55 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_63 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_64 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_65 | 0.0 | 1.0 | 0.0 |
| IHJFEKAP_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IHJFEKAP_2 | 87366 | 92627 | False | Unknown | VOG4755, |
| IHJFEKAP_63 | 159807 | 167800 | False | Siphoviridae | VOG9606, |
Phigaro v2.4.0 (Database: Jan. 2024 release)