Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGIOODMD_18 | 31030 | 32955 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
| PGIOODMD_41 | 1151 | 2317 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
| PGIOODMD_41 | 3 | 938 | ErmF | ARO:3000498 | ErmF | 99.62 | 116.92 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PGIOODMD_41 | 138 | 938 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| PGIOODMD_41 | 1151 | 2317 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| PGIOODMD_18 | 31030 | 32955 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGIOODMD_41 | 138 | 935 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| PGIOODMD_41 | 1154 | 2317 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| PGIOODMD_18 | 31033 | 32955 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGIOODMD_1 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_2 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_3 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_4 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_5 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_6 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_7 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_8 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_9 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_10 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_11 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_12 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_13 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_14 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_15 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_16 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_17 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_18 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_19 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_20 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_21 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_22 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_23 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_24 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_25 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_26 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_27 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_28 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_29 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_30 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_31 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_32 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_33 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_34 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_35 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_36 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_37 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_38 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_39 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_40 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_41 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_42 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_43 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_44 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_45 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_46 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_47 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_48 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_49 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_50 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_51 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_52 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_53 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_54 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_55 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_56 | 1.0 | 0.0 | 1.0 |
| PGIOODMD_57 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_66 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_68 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_69 | 0.0 | 1.0 | 0.0 |
| PGIOODMD_70 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGIOODMD_4 | 11696 | 19689 | False | Siphoviridae | VOG0204, |
| PGIOODMD_33 | 86917 | 92178 | False | Unknown | VOG4755, |
Phigaro v2.4.0 (Database: Jan. 2024 release)