Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GDFOBJAF_20 | 11239 | 13164 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GDFOBJAF_60 | 8049 | 8939 | CblA-1 | ARO:3002999 | CblA-1 | 97.64 | 100.00 | GQ343019.1 |
| GDFOBJAF_19 | 1150 | 2286 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| GDFOBJAF_31 | 412 | 1617 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| GDFOBJAF_1 | 185 | 1150 | CfxA5 | ARO:3003096 | CfxA5 | 99.69 | 100.00 | AY769934.1 |
| GDFOBJAF_19 | 137 | 937 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GDFOBJAF_19 | 137 | 937 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| GDFOBJAF_19 | 1150 | 2316 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| GDFOBJAF_1 | 185 | 1150 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| GDFOBJAF_20 | 11239 | 13164 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GDFOBJAF_19 | 137 | 934 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| GDFOBJAF_31 | 1642 | 2151 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GDFOBJAF_19 | 1153 | 2316 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| GDFOBJAF_1 | 185 | 1147 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | BLASTX | 99.69 | 100.00 | WP_032946415.1 |
| GDFOBJAF_20 | 11242 | 13164 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GDFOBJAF_31 | 412 | 1614 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| GDFOBJAF_60 | 8049 | 8936 | cblA | CblA family class A beta-lactamase | BLASTX | 97.64 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GDFOBJAF_41 | 2392 | 2880 | repUS2 | 490 / 681 | 99.39 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GDFOBJAF_1 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_2 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_3 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_4 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_5 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_6 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_7 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_8 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_9 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_10 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_11 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_12 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_13 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_14 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_15 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_16 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_17 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_18 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_19 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_20 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_21 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_22 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_23 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_24 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_25 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_26 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_27 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_28 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_29 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_30 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_31 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_32 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_33 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_34 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_35 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_36 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_37 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_39 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_40 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_41 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_42 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_43 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_44 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_45 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_46 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_47 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_48 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_49 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_50 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_51 | 1.0 | 0.0 | 1.0 |
| GDFOBJAF_52 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_55 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_58 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_59 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_60 | 0.0 | 1.0 | 0.0 |
| GDFOBJAF_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GDFOBJAF_7 | 87563 | 102433 | False | Siphoviridae | VOG0025, |
| GDFOBJAF_60 | 128074 | 139295 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)