Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHKDPGPL_59 | 300370 | 301326 | ErmF | ARO:3000498 | ErmF | 99.62 | 119.55 | M17124.1 |
| CHKDPGPL_59 | 299021 | 300157 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| CHKDPGPL_13 | 21177 | 21914 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHKDPGPL_59 | 300370 | 301170 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| CHKDPGPL_59 | 298991 | 300157 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| CHKDPGPL_13 | 21177 | 21914 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | U18931 |
| CHKDPGPL_13 | 26356 | 27573 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHKDPGPL_59 | 300373 | 301170 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| CHKDPGPL_59 | 298991 | 300154 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| CHKDPGPL_13 | 21177 | 21911 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| CHKDPGPL_13 | 26356 | 27576 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHKDPGPL_1 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_2 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_3 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_4 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_5 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_6 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_7 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_8 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_9 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_10 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_11 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_12 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_13 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_14 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_15 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_16 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_17 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_18 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_19 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_20 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_21 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_22 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_23 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_24 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_25 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_26 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_27 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_28 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_29 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_30 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_32 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_33 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_34 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_35 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_36 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_37 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_38 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_39 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_40 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_41 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_42 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_43 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_44 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_45 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_46 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_47 | 1.0 | 0.0 | 1.0 |
| CHKDPGPL_55 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_59 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_60 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_61 | 0.0 | 1.0 | 0.0 |
| CHKDPGPL_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHKDPGPL_13 | 127932 | 137833 | False | Siphoviridae | VOG3691, |
| CHKDPGPL_15 | 21431 | 23222 | False | Unknown | VOG9667, |
| CHKDPGPL_26 | 9100 | 16985 | False | Unknown | VOG4573, |
| CHKDPGPL_44 | 277615 | 284395 | False | Siphoviridae | VOG4581, |
Phigaro v2.4.0 (Database: Jan. 2024 release)