Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
GFCPKPKP_7224244672425171WalR1.75e-113transcriptional regulatory protein84.25100.00EPH95667

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
GFCPKPKP_7219468061947741rep28936 / 936100.00CP005948
GFCPKPKP_3910821956rep38876 / 90399.43CP005943
GFCPKPKP_72299644300744repUS731101 / 110194.37CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GFCPKPKP_11.00.01.0
GFCPKPKP_61.00.01.0
GFCPKPKP_71.00.01.0
GFCPKPKP_81.00.01.0
GFCPKPKP_91.00.01.0
GFCPKPKP_101.00.01.0
GFCPKPKP_111.00.01.0
GFCPKPKP_121.00.01.0
GFCPKPKP_281.00.01.0
GFCPKPKP_291.00.01.0
GFCPKPKP_301.00.01.0
GFCPKPKP_311.00.01.0
GFCPKPKP_321.00.01.0
GFCPKPKP_331.00.01.0
GFCPKPKP_340.01.00.0
GFCPKPKP_351.00.01.0
GFCPKPKP_361.00.01.0
GFCPKPKP_391.00.01.0
GFCPKPKP_450.01.00.0
GFCPKPKP_461.00.01.0
GFCPKPKP_471.00.01.0
GFCPKPKP_481.00.01.0
GFCPKPKP_491.00.01.0
GFCPKPKP_501.00.01.0
GFCPKPKP_510.01.00.0
GFCPKPKP_591.00.01.0
GFCPKPKP_601.00.01.0
GFCPKPKP_611.00.01.0
GFCPKPKP_621.00.01.0
GFCPKPKP_631.00.01.0
GFCPKPKP_641.00.01.0
GFCPKPKP_701.00.01.0
GFCPKPKP_720.01.00.0
GFCPKPKP_731.00.01.0
GFCPKPKP_741.00.01.0
GFCPKPKP_751.00.01.0
GFCPKPKP_761.00.01.0
GFCPKPKP_771.00.01.0
GFCPKPKP_781.00.01.0
GFCPKPKP_801.00.01.0
GFCPKPKP_811.00.01.0
GFCPKPKP_821.00.01.0
GFCPKPKP_840.01.00.0
GFCPKPKP_851.00.01.0
GFCPKPKP_861.00.01.0
GFCPKPKP_971.00.01.0
GFCPKPKP_981.00.01.0
GFCPKPKP_991.00.01.0
GFCPKPKP_1001.00.01.0
GFCPKPKP_1011.00.01.0
GFCPKPKP_1021.00.01.0
GFCPKPKP_1031.00.01.0
GFCPKPKP_1041.00.01.0
GFCPKPKP_1061.00.01.0
GFCPKPKP_1081.00.01.0
GFCPKPKP_1091.00.01.0
GFCPKPKP_1101.00.01.0
GFCPKPKP_1111.00.01.0
GFCPKPKP_1121.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
GFCPKPKP_72315898326286FalseSiphoviridaeVOG4632, VOG4609, VOG6414, VOG0205, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568
GFCPKPKP_72616371646293FalseSiphoviridaeVOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG0044, VOG3643, VOG0634, VOG9671, VOG0198, VOG4841, VOG4153, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements