Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
HJILFCAE_6627255732726277WalR1.76e-113transcriptional regulatory protein84.25100.00EPH95667

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
HJILFCAE_6622478152248750rep28936 / 936100.00CP005948
HJILFCAE_6616422671643141rep38876 / 90399.43CP005943
HJILFCAE_6613343011335401repUS731101 / 110194.37CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HJILFCAE_11.00.01.0
HJILFCAE_31.00.01.0
HJILFCAE_201.00.01.0
HJILFCAE_211.00.01.0
HJILFCAE_221.00.01.0
HJILFCAE_231.00.01.0
HJILFCAE_241.00.01.0
HJILFCAE_251.00.01.0
HJILFCAE_261.00.01.0
HJILFCAE_281.00.01.0
HJILFCAE_291.00.01.0
HJILFCAE_301.00.01.0
HJILFCAE_311.00.01.0
HJILFCAE_321.00.01.0
HJILFCAE_331.00.01.0
HJILFCAE_341.00.01.0
HJILFCAE_351.00.01.0
HJILFCAE_361.00.01.0
HJILFCAE_370.01.00.0
HJILFCAE_381.00.01.0
HJILFCAE_391.00.01.0
HJILFCAE_441.00.01.0
HJILFCAE_491.00.01.0
HJILFCAE_501.00.01.0
HJILFCAE_511.00.01.0
HJILFCAE_521.00.01.0
HJILFCAE_531.00.01.0
HJILFCAE_540.01.00.0
HJILFCAE_551.00.01.0
HJILFCAE_561.00.01.0
HJILFCAE_571.00.01.0
HJILFCAE_581.00.01.0
HJILFCAE_591.00.01.0
HJILFCAE_660.01.00.0
HJILFCAE_741.00.01.0
HJILFCAE_751.00.01.0
HJILFCAE_761.00.01.0
HJILFCAE_771.00.01.0
HJILFCAE_781.00.01.0
HJILFCAE_791.00.01.0
HJILFCAE_801.00.01.0
HJILFCAE_811.00.01.0
HJILFCAE_861.00.01.0
HJILFCAE_881.00.01.0
HJILFCAE_891.00.01.0
HJILFCAE_901.00.01.0
HJILFCAE_911.00.01.0
HJILFCAE_921.00.01.0
HJILFCAE_931.00.01.0
HJILFCAE_941.00.01.0
HJILFCAE_951.00.01.0
HJILFCAE_961.00.01.0
HJILFCAE_991.00.01.0
HJILFCAE_1001.00.01.0
HJILFCAE_1011.00.01.0
HJILFCAE_1040.01.00.0
HJILFCAE_1051.00.01.0
HJILFCAE_1061.00.01.0
HJILFCAE_1070.01.00.0
HJILFCAE_1081.00.01.0
HJILFCAE_1091.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
HJILFCAE_669888051018727FalseSiphoviridaeVOG6540, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4153, VOG4841, VOG0198, VOG9671, VOG0634, VOG3643, VOG0044, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514
HJILFCAE_6613088361319669FalseSiphoviridaeVOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG0205, VOG6414, VOG4609, VOG4632

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements