Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MADMBJJJ_173 | 2668702 | 2669406 | WalR | 1.74e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MADMBJJJ_77 | 91 | 978 | rep28 | 888 / 936 | 100.00 | CP005948 |
| MADMBJJJ_218 | 138 | 1094 | repUS64 | 958 / 954 | 92.69 | JN601038 |
| MADMBJJJ_166 | 15 | 561 | rep38 | 552 / 903 | 86.78 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MADMBJJJ_1 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_2 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_3 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_13 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_16 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_17 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_18 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_19 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_21 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_24 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_31 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_32 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_33 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_34 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_36 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_37 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_38 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_39 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_40 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_41 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_42 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_43 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_45 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_51 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_52 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_53 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_54 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_55 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_56 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_65 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_66 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_67 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_69 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_71 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_73 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_94 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_95 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_96 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_97 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_98 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_99 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_100 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_102 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_103 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_104 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_105 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_107 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_112 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_121 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_122 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_123 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_125 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_126 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_127 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_138 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_139 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_140 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_141 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_142 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_143 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_145 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_148 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_149 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_150 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_151 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_152 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_153 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_162 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_165 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_166 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_167 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_168 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_169 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_172 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_173 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_182 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_183 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_184 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_185 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_192 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_193 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_194 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_195 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_196 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_197 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_198 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_199 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_200 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_201 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_202 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_206 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_214 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_215 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_216 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_217 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_218 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_219 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_220 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_221 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_222 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_223 | 1.0 | 0.0 | 1.0 |
| MADMBJJJ_224 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_225 | 0.0 | 1.0 | 0.0 |
| MADMBJJJ_226 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MADMBJJJ_173 | 806934 | 836182 | False | Siphoviridae | VOG0862, VOG8520, VOG4552, VOG0189, VOG11024, VOG4693, VOG0044, VOG3643, VOG0634, VOG9671, VOG0198, VOG4841, VOG4153, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
Phigaro v2.4.0 (Database: Jan. 2024 release)