Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
DHGMEAMM_49460621459917WalR1.59e-113transcriptional regulatory protein84.25100.00EPH95667

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
DHGMEAMM_49937213938148rep28936 / 936100.00CP005948
DHGMEAMM_165345854332rep38876 / 90399.43CP005943
DHGMEAMM_2744805580repUS731101 / 110194.37CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
DHGMEAMM_11.00.01.0
DHGMEAMM_21.00.01.0
DHGMEAMM_31.00.01.0
DHGMEAMM_41.00.01.0
DHGMEAMM_51.00.01.0
DHGMEAMM_61.00.01.0
DHGMEAMM_71.00.01.0
DHGMEAMM_151.00.01.0
DHGMEAMM_161.00.01.0
DHGMEAMM_171.00.01.0
DHGMEAMM_181.00.01.0
DHGMEAMM_191.00.01.0
DHGMEAMM_200.01.00.0
DHGMEAMM_211.00.01.0
DHGMEAMM_221.00.01.0
DHGMEAMM_231.00.01.0
DHGMEAMM_241.00.01.0
DHGMEAMM_251.00.01.0
DHGMEAMM_271.00.01.0
DHGMEAMM_351.00.01.0
DHGMEAMM_361.00.01.0
DHGMEAMM_380.01.00.0
DHGMEAMM_431.00.01.0
DHGMEAMM_441.00.01.0
DHGMEAMM_451.00.01.0
DHGMEAMM_490.01.00.0
DHGMEAMM_531.00.01.0
DHGMEAMM_541.00.01.0
DHGMEAMM_551.00.01.0
DHGMEAMM_561.00.01.0
DHGMEAMM_571.00.01.0
DHGMEAMM_581.00.01.0
DHGMEAMM_601.00.01.0
DHGMEAMM_661.00.01.0
DHGMEAMM_671.00.01.0
DHGMEAMM_681.00.01.0
DHGMEAMM_691.00.01.0
DHGMEAMM_701.00.01.0
DHGMEAMM_711.00.01.0
DHGMEAMM_751.00.01.0
DHGMEAMM_761.00.01.0
DHGMEAMM_781.00.01.0
DHGMEAMM_791.00.01.0
DHGMEAMM_801.00.01.0
DHGMEAMM_810.01.00.0
DHGMEAMM_821.00.01.0
DHGMEAMM_881.00.01.0
DHGMEAMM_891.00.01.0
DHGMEAMM_901.00.01.0
DHGMEAMM_910.01.00.0
DHGMEAMM_921.00.01.0
DHGMEAMM_931.00.01.0
DHGMEAMM_941.00.01.0
DHGMEAMM_951.00.01.0
DHGMEAMM_961.00.01.0
DHGMEAMM_1001.00.01.0
DHGMEAMM_1011.00.01.0
DHGMEAMM_1021.00.01.0
DHGMEAMM_1031.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
DHGMEAMM_4922308412260763FalseSiphoviridaeVOG6540, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4153, VOG4841, VOG0198, VOG9671, VOG0634, VOG3643, VOG0044, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514
DHGMEAMM_4925507482560092FalseSiphoviridaeVOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG0205, VOG6414

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements