Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
DLIAIFAD_3424235042424208WalR1.75e-113transcriptional regulatory protein84.25100.00EPH95667

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
DLIAIFAD_3419459801946915rep28936 / 936100.00CP005948
DLIAIFAD_3410821956rep38876 / 90399.43CP005943

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
DLIAIFAD_11.00.01.0
DLIAIFAD_111.00.01.0
DLIAIFAD_121.00.01.0
DLIAIFAD_131.00.01.0
DLIAIFAD_151.00.01.0
DLIAIFAD_161.00.01.0
DLIAIFAD_171.00.01.0
DLIAIFAD_181.00.01.0
DLIAIFAD_231.00.01.0
DLIAIFAD_311.00.01.0
DLIAIFAD_321.00.01.0
DLIAIFAD_331.00.01.0
DLIAIFAD_340.01.00.0
DLIAIFAD_351.00.01.0
DLIAIFAD_361.00.01.0
DLIAIFAD_431.00.01.0
DLIAIFAD_441.00.01.0
DLIAIFAD_461.00.01.0
DLIAIFAD_471.00.01.0
DLIAIFAD_551.00.01.0
DLIAIFAD_561.00.01.0
DLIAIFAD_571.00.01.0
DLIAIFAD_581.00.01.0
DLIAIFAD_591.00.01.0
DLIAIFAD_601.00.01.0
DLIAIFAD_611.00.01.0
DLIAIFAD_630.01.00.0
DLIAIFAD_641.00.01.0
DLIAIFAD_651.00.01.0
DLIAIFAD_660.01.00.0
DLIAIFAD_681.00.01.0
DLIAIFAD_691.00.01.0
DLIAIFAD_721.00.01.0
DLIAIFAD_731.00.01.0
DLIAIFAD_741.00.01.0
DLIAIFAD_751.00.01.0
DLIAIFAD_761.00.01.0
DLIAIFAD_771.00.01.0
DLIAIFAD_791.00.01.0
DLIAIFAD_801.00.01.0
DLIAIFAD_811.00.01.0
DLIAIFAD_821.00.01.0
DLIAIFAD_851.00.01.0
DLIAIFAD_861.00.01.0
DLIAIFAD_871.00.01.0
DLIAIFAD_881.00.01.0
DLIAIFAD_900.01.00.0
DLIAIFAD_911.00.01.0
DLIAIFAD_921.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
DLIAIFAD_34318299325660FalseSiphoviridaeVOG6414, VOG0205, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568
DLIAIFAD_34615645645567FalseSiphoviridaeVOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG0044, VOG3643, VOG0634, VOG9671, VOG0198, VOG4841, VOG4153, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements