Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
ONAPGHIA_120788082078104WalR1.74e-113transcriptional regulatory protein84.25100.00EPH95667

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
ONAPGHIA_386271562rep28936 / 936100.00CP005948
ONAPGHIA_6210821956rep38876 / 90399.43CP005943
ONAPGHIA_110336701034770repUS731101 / 110194.37CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
ONAPGHIA_10.01.00.0
ONAPGHIA_41.00.01.0
ONAPGHIA_51.00.01.0
ONAPGHIA_101.00.01.0
ONAPGHIA_111.00.01.0
ONAPGHIA_121.00.01.0
ONAPGHIA_131.00.01.0
ONAPGHIA_141.00.01.0
ONAPGHIA_151.00.01.0
ONAPGHIA_171.00.01.0
ONAPGHIA_241.00.01.0
ONAPGHIA_261.00.01.0
ONAPGHIA_281.00.01.0
ONAPGHIA_291.00.01.0
ONAPGHIA_311.00.01.0
ONAPGHIA_321.00.01.0
ONAPGHIA_331.00.01.0
ONAPGHIA_381.00.01.0
ONAPGHIA_431.00.01.0
ONAPGHIA_441.00.01.0
ONAPGHIA_451.00.01.0
ONAPGHIA_461.00.01.0
ONAPGHIA_471.00.01.0
ONAPGHIA_481.00.01.0
ONAPGHIA_501.00.01.0
ONAPGHIA_511.00.01.0
ONAPGHIA_521.00.01.0
ONAPGHIA_531.00.01.0
ONAPGHIA_541.00.01.0
ONAPGHIA_551.00.01.0
ONAPGHIA_561.00.01.0
ONAPGHIA_571.00.01.0
ONAPGHIA_611.00.01.0
ONAPGHIA_621.00.01.0
ONAPGHIA_631.00.01.0
ONAPGHIA_641.00.01.0
ONAPGHIA_651.00.01.0
ONAPGHIA_661.00.01.0
ONAPGHIA_671.00.01.0
ONAPGHIA_680.01.00.0
ONAPGHIA_691.00.01.0
ONAPGHIA_701.00.01.0
ONAPGHIA_791.00.01.0
ONAPGHIA_800.01.00.0
ONAPGHIA_811.00.01.0
ONAPGHIA_830.01.00.0
ONAPGHIA_841.00.01.0
ONAPGHIA_851.00.01.0
ONAPGHIA_971.00.01.0
ONAPGHIA_981.00.01.0
ONAPGHIA_991.00.01.0
ONAPGHIA_1001.00.01.0
ONAPGHIA_1011.00.01.0
ONAPGHIA_1021.00.01.0
ONAPGHIA_1030.01.00.0
ONAPGHIA_1051.00.01.0
ONAPGHIA_1061.00.01.0
ONAPGHIA_1071.00.01.0
ONAPGHIA_1081.00.01.0
ONAPGHIA_1161.00.01.0
ONAPGHIA_1171.00.01.0
ONAPGHIA_1181.00.01.0
ONAPGHIA_1191.00.01.0
ONAPGHIA_1201.00.01.0
ONAPGHIA_1211.00.01.0
ONAPGHIA_1221.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
ONAPGHIA_1688298718220FalseSiphoviridaeVOG6540, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4153, VOG4841, VOG0198, VOG9671, VOG0634, VOG3643, VOG0044, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514
ONAPGHIA_110082051019038FalseSiphoviridaeVOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG0205, VOG6414, VOG4609, VOG4632

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements