Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OEPCNNNI_1 | 738479 | 737778 | WalR | 3.19e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OEPCNNNI_4 | 6311 | 7246 | rep28 | 936 / 936 | 99.89 | CP005948 |
| OEPCNNNI_12 | 63485 | 64387 | rep38 | 903 / 903 | 99.22 | CP005943 |
| OEPCNNNI_12 | 17007 | 17967 | repUS73 | 977 / 1101 | 81.68 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OEPCNNNI_1 | 0.0 | 1.0 | 0.0 |
| OEPCNNNI_4 | 1.0 | 0.0 | 1.0 |
| OEPCNNNI_8 | 1.0 | 0.0 | 1.0 |
| OEPCNNNI_9 | 1.0 | 0.0 | 1.0 |
| OEPCNNNI_12 | 1.0 | 0.0 | 1.0 |
| OEPCNNNI_14 | 1.0 | 0.0 | 1.0 |
| OEPCNNNI_19 | 1.0 | 0.0 | 1.0 |
| OEPCNNNI_20 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OEPCNNNI_1 | 1771242 | 1811946 | True | Myoviridae | VOG1309, VOG0186, VOG7236, VOG4693, VOG6005, VOG0044, VOG9667, VOG0198, VOG4214, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG4910, VOG1433, VOG6282, VOG1026, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG10793, VOG0703, VOG1637, VOG0985, VOG6495, VOG4603, VOG4552 |
| OEPCNNNI_1 | 1816435 | 1850048 | False | Myoviridae | VOG0283, VOG0226, VOG0514, VOG4566, VOG0189, VOG3307, VOG0044, VOG4010, VOG0198, VOG8364, VOG0796, VOG10227, VOG1912, VOG4564, VOG4918, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845 |
Phigaro v2.4.0 (Database: Jan. 2024 release)