Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BJAOKEKP_15 | 1195368 | 1197296 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.48 | 99.95 | L33696 |
| BJAOKEKP_13 | 9966 | 10769 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 98.14 | 99.75 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BJAOKEKP_11 | 601750 | 602259 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| BJAOKEKP_11 | 602287 | 603495 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | INTERNAL_STOP | 90.10 | 100.00 | WP_063853729.1 |
| BJAOKEKP_11 | 40159 | 40746 | cblA | CblA family class A beta-lactamase | PARTIALX | 100.00 | 66.22 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BJAOKEKP_2 | 1704 | 2283 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BJAOKEKP_1 | 1.0 | 0.0 | 1.0 |
| BJAOKEKP_2 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_3 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_4 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_5 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_6 | 1.0 | 0.0 | 1.0 |
| BJAOKEKP_7 | 1.0 | 0.0 | 1.0 |
| BJAOKEKP_8 | 1.0 | 0.0 | 1.0 |
| BJAOKEKP_9 | 1.0 | 0.0 | 1.0 |
| BJAOKEKP_10 | 1.0 | 0.0 | 1.0 |
| BJAOKEKP_11 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_12 | 1.0 | 0.0 | 1.0 |
| BJAOKEKP_13 | 1.0 | 0.0 | 1.0 |
| BJAOKEKP_14 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_15 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_16 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_17 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_18 | 0.0 | 1.0 | 0.0 |
| BJAOKEKP_19 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BJAOKEKP_4 | 147663 | 151157 | False | Unknown | VOG11065, |
Phigaro v2.4.0 (Database: Jan. 2024 release)