Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 2 | 5.39 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPFDEDJL_8 | 23983 | 24468 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| JPFDEDJL_8 | 19000 | 20376 | tet(L) | ARO:3000179 | tet(L) | 98.25 | 100.00 | M11036.1 |
| JPFDEDJL_8 | 16881 | 18806 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.31 | AB039845.1 |
| JPFDEDJL_17 | 5306 | 6715 | fexB | ARO:3007019 | fexB | 98.72 | 100.00 | JN201336.1 |
| JPFDEDJL_21 | 54 | 1682 | poxtA | ARO:3004470 | poxtA | 99.08 | 100.00 | MF095097.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JPFDEDJL_21 | 54 | 1682 | poxtA | Chloramphenicol, Florfenicol, Linezolid, Doxycycline, Tetracycline | 99.69 | 100.00 | MF095097 |
| JPFDEDJL_17 | 5306 | 6715 | fexB | Chloramphenicol, Florfenicol | 99.57 | 100.00 | JN201336 |
| JPFDEDJL_8 | 19001 | 20376 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.49 | 99.93 | AY081910 |
| JPFDEDJL_8 | 16881 | 18806 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | X75073 |
| JPFDEDJL_8 | 23983 | 24468 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPFDEDJL_8 | 23983 | 24465 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| JPFDEDJL_8 | 16881 | 18803 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.38 | 100.00 | WP_000691727.1 |
| JPFDEDJL_21 | 57 | 1682 | poxtA | ABC-F type ribosomal protection protein PoxtA | BLASTX | 99.08 | 100.00 | WP_002415638.1 |
| JPFDEDJL_17 | 5306 | 6712 | fexB | chloramphenicol/florfenicol efflux MFS transporter FexB | BLASTX | 98.72 | 100.00 | WP_002415211.1 |
| JPFDEDJL_8 | 19000 | 20373 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JPFDEDJL_61 | 22930 | 22223 | WalR | 2.70e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| JPFDEDJL_33 | 47801 | 47998 | CspR | 2.13e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| JPFDEDJL_33 | 47801 | 47995 | CspA | 1.04e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPFDEDJL_1 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_2 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_3 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_4 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_5 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_6 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_7 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_8 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_9 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_10 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_11 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_12 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_13 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_14 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_15 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_16 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_17 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_18 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_19 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_20 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_21 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_22 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_23 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_24 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_25 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_28 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_29 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_30 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_31 | 1.0 | 0.0 | 1.0 |
| JPFDEDJL_33 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_44 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_55 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_59 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_60 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_61 | 0.0 | 1.0 | 0.0 |
| JPFDEDJL_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)