Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GPJBPKJD_1 | 474907 | 474710 | CspA | 1.46e-27 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| GPJBPKJD_1 | 474907 | 474713 | CspR | 6.33e-27 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPJBPKJD_1 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_2 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_3 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_4 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_5 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_6 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_7 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_8 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_9 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_10 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_11 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_12 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_13 | 0.0 | 1.0 | 0.0 |
| GPJBPKJD_14 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPJBPKJD_1 | 252428 | 272683 | False | Myoviridae | VOG10457, VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083, VOG5235, VOG0189 |
| GPJBPKJD_7 | 1438 | 17901 | False | Siphoviridae | VOG4564, VOG0720, VOG10227, VOG0796, VOG1637, VOG4618, VOG1315, VOG0198, VOG4693, VOG8685, VOG0189, VOG4566, VOG0226, VOG0186, VOG1309, VOG0650, VOG9667, VOG7298, VOG0862, VOG0819 |
| GPJBPKJD_8 | 117856 | 123089 | True | Myoviridae | VOG8387, VOG4737, VOG8387, VOG5088, VOG0221 |
Phigaro v2.4.0 (Database: Jan. 2024 release)