Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCNJFOCM_1 | 139973 | 140677 | WalR | 2.14e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCNJFOCM_1 | 0.0 | 1.0 | 0.0 |
| LCNJFOCM_2 | 1.0 | 0.0 | 1.0 |
| LCNJFOCM_3 | 1.0 | 0.0 | 1.0 |
| LCNJFOCM_4 | 1.0 | 0.0 | 1.0 |
| LCNJFOCM_5 | 1.0 | 0.0 | 1.0 |
| LCNJFOCM_6 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCNJFOCM_1 | 1817143 | 1852215 | False | Siphoviridae | VOG4918, VOG0054, VOG7888, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0701, VOG9763, VOG5601, VOG5587, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG4549, VOG10904, VOG4570, VOG9667, VOG9551, VOG7727, VOG0198, VOG0044, VOG3643, VOG0152, VOG0822, VOG0536, VOG9860, VOG0226, VOG4566 |
| LCNJFOCM_1 | 1950947 | 1961408 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG5088, VOG4609 |
| LCNJFOCM_1 | 2268604 | 2279708 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| LCNJFOCM_1 | 2431820 | 2461375 | False | Siphoviridae | VOG7888, VOG4599, VOG4605, VOG5088, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4553, VOG4568, VOG4556, VOG3644, VOG1886, VOG6965, VOG1886, VOG4581, VOG4841, VOG0531, VOG9033, VOG4549, VOG5821, VOG4570, VOG3477, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)