Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EFHAJPDI_199 | 28858 | 29562 | WalR | 2.81e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| EFHAJPDI_221 | 17754 | 17951 | CspR | 5.07e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFHAJPDI_1 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_2 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_3 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_4 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_5 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_6 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_7 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_8 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_9 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_10 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_11 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_12 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_13 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_14 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_15 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_16 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_17 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_18 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_19 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_20 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_21 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_22 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_23 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_24 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_26 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_27 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_28 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_30 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_31 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_32 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_33 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_34 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_35 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_36 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_37 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_38 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_39 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_40 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_41 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_42 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_43 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_44 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_45 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_46 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_55 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_66 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_77 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_88 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_99 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_110 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_111 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_122 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_133 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_144 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_155 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_166 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_177 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_188 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_199 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_210 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_221 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_222 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_233 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_244 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_255 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_266 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_277 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_288 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_299 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_310 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_321 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_332 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_333 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_344 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_355 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_366 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_377 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_388 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_399 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_410 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_421 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_432 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_443 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_444 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_455 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_466 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_467 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_468 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_469 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_470 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_471 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_472 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_473 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_474 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_475 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_476 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_477 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_478 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_479 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_480 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_481 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_482 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_483 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_484 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_485 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_486 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_489 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_490 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_491 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_492 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_493 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_494 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_495 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_496 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_497 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_498 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_499 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_500 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_501 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_502 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_503 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_504 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_505 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_506 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_507 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_508 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_509 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_510 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_511 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_512 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_513 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_514 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_515 | 0.0 | 1.0 | 0.0 |
| EFHAJPDI_516 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_518 | 1.0 | 0.0 | 1.0 |
| EFHAJPDI_519 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFHAJPDI_77 | 9368 | 14937 | False | Siphoviridae | VOG4606, VOG0205, VOG4841, VOG4544 |
| EFHAJPDI_244 | 19086 | 28564 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| EFHAJPDI_444 | 6165 | 18394 | False | Siphoviridae | VOG4799, VOG0189, VOG0982, VOG5280, VOG5317, VOG3307, VOG0198, VOG5088, VOG4570, VOG4549, VOG5532 |
Phigaro v2.4.0 (Database: Jan. 2024 release)