Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NCIDLHPG_69 | 75325 | 75128 | CspA | 2.41e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| NCIDLHPG_69 | 75325 | 75131 | CspR | 1.05e-27 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NCIDLHPG_11 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_22 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_28 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_29 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_30 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_31 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_32 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_33 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_34 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_35 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_36 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_37 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_38 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_39 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_40 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_41 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_42 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_43 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_44 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_45 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_46 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_47 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_48 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_49 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_50 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_51 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_52 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_53 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_54 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_55 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_56 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_57 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_58 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_59 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_60 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_61 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_62 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_63 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_64 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_65 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_66 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_67 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_68 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_69 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_70 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_71 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_72 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_73 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_74 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_75 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_76 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_77 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_78 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_79 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_80 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_81 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_82 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_83 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_84 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_85 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_86 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_87 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_88 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_89 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_90 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_91 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_92 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_93 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_94 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_95 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_96 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_97 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_99 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_100 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_102 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_103 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_104 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_105 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_106 | 1.0 | 0.0 | 1.0 |
| NCIDLHPG_113 | 0.0 | 1.0 | 0.0 |
| NCIDLHPG_124 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NCIDLHPG_46 | 14862 | 18046 | False | Unknown | VOG1309, VOG0186, VOG0226 |
| NCIDLHPG_91 | 63745 | 88699 | False | Siphoviridae | VOG1020, VOG8239, VOG8294, VOG0703, VOG5924, VOG8917, VOG0648, VOG4599, VOG0727, VOG4545, VOG0725, VOG0799, VOG0724, VOG5660, VOG4713, VOG1319, VOG10914, VOG1300, VOG4564, VOG0720, VOG10227 |
Phigaro v2.4.0 (Database: Jan. 2024 release)