Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FDEHFHDG_29 | 45763 | 49323 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FDEHFHDG_1 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_2 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_11 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_19 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_29 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_38 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_45 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_55 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_62 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_71 | 1.0 | 0.0 | 1.0 |
| FDEHFHDG_81 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_89 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_90 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_100 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_119 | 1.0 | 0.0 | 1.0 |
| FDEHFHDG_129 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_188 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_288 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_338 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_348 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_356 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_365 | 0.0 | 1.0 | 0.0 |
| FDEHFHDG_375 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FDEHFHDG_338 | 126169 | 154330 | False | Siphoviridae | VOG0731, VOG9502, VOG0275, VOG6373, VOG5361, VOG5361, VOG5361, VOG3653, VOG4545, VOG4557, VOG1154, VOG4589, VOG1581, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1154, VOG4813, VOG2038, VOG0686, VOG9105, VOG4564, VOG8486, VOG2538, VOG0692, VOG1241 |
| FDEHFHDG_365 | 10756 | 22240 | False | Siphoviridae | VOG4194, VOG9570, VOG9569, VOG5793, VOG5588, VOG5589, VOG5587, VOG4568, VOG4556, VOG4544 |
Phigaro v2.4.0 (Database: Jan. 2024 release)