Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KICCEDGJ_1 | 764955 | 766160 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| KICCEDGJ_1 | 743004 | 743906 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| KICCEDGJ_68 | 82748 | 84722 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| KICCEDGJ_12 | 8233 | 9198 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KICCEDGJ_1 | 743004 | 743906 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| KICCEDGJ_68 | 82748 | 84673 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| KICCEDGJ_12 | 8233 | 9198 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| KICCEDGJ_12 | 8233 | 9198 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| KICCEDGJ_12 | 8233 | 9198 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| KICCEDGJ_12 | 8233 | 9198 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KICCEDGJ_1 | 743007 | 743906 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| KICCEDGJ_12 | 8236 | 9198 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| KICCEDGJ_68 | 82751 | 84673 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| KICCEDGJ_1 | 766185 | 766694 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| KICCEDGJ_1 | 764955 | 766157 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KICCEDGJ_16 | 1860 | 2440 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KICCEDGJ_1 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_2 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_4 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_5 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_6 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_7 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_8 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_9 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_10 | 1.0 | 0.0 | 1.0 |
| KICCEDGJ_11 | 1.0 | 0.0 | 1.0 |
| KICCEDGJ_12 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_13 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_15 | 1.0 | 0.0 | 1.0 |
| KICCEDGJ_16 | 1.0 | 0.0 | 1.0 |
| KICCEDGJ_17 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_24 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_35 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_46 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_57 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_68 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_79 | 0.0 | 1.0 | 0.0 |
| KICCEDGJ_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KICCEDGJ_1 | 668737 | 675461 | False | Unknown | VOG0572, |
| KICCEDGJ_46 | 95392 | 101267 | False | Siphoviridae | VOG4556, |
| KICCEDGJ_57 | 119537 | 125388 | False | Myoviridae | VOG11032, |
Phigaro v2.4.0 (Database: Jan. 2024 release)