Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ECNEEKLO_1 | 438055 | 438855 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| ECNEEKLO_1 | 430476 | 432401 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ECNEEKLO_1 | 438055 | 438855 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| ECNEEKLO_1 | 430476 | 432401 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ECNEEKLO_1 | 438058 | 438855 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| ECNEEKLO_1 | 430479 | 432401 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ECNEEKLO_116 | 1755 | 2434 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ECNEEKLO_1 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_2 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_13 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_24 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_35 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_46 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_50 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_51 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_52 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_53 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_54 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_55 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_56 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_57 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_58 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_59 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_60 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_61 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_62 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_63 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_64 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_65 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_66 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_67 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_68 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_69 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_70 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_71 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_72 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_73 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_74 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_75 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_76 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_77 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_78 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_79 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_80 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_81 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_82 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_83 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_84 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_85 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_86 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_87 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_88 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_89 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_90 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_91 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_92 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_93 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_94 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_95 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_96 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_97 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_98 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_99 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_100 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_101 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_102 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_103 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_104 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_105 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_106 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_107 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_108 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_109 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_110 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_111 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_112 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_113 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_114 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_115 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_116 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_117 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_118 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_119 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_120 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_121 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_122 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_124 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_126 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_127 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_128 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_129 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_130 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_131 | 1.0 | 0.0 | 1.0 |
| ECNEEKLO_132 | 0.0 | 1.0 | 0.0 |
| ECNEEKLO_134 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ECNEEKLO_52 | 50704 | 59762 | False | Unknown | VOG4572, |
| ECNEEKLO_88 | 119169 | 132124 | False | Siphoviridae | VOG4690, |
Phigaro v2.4.0 (Database: Jan. 2024 release)