Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJKAAGEL_1 | 118131 | 118868 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| JJKAAGEL_202 | 92261 | 93226 | CfxA5 | ARO:3003096 | CfxA5 | 100.00 | 100.00 | AY769934.1 |
| JJKAAGEL_146 | 1636 | 3609 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JJKAAGEL_202 | 92261 | 93226 | cfxA5 | Unknown Beta-lactam | 100.00 | 100.00 | AY769934 |
| JJKAAGEL_1 | 118131 | 118868 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| JJKAAGEL_146 | 1684 | 3609 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJKAAGEL_202 | 92261 | 93223 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | EXACTX | 100.00 | 100.00 | WP_032946415.1 |
| JJKAAGEL_1 | 118131 | 118865 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| JJKAAGEL_146 | 1684 | 3606 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJKAAGEL_1 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_2 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_13 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_24 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_35 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_46 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_57 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_68 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_79 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_90 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_101 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_112 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_113 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_124 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_128 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_129 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_130 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_131 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_132 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_133 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_134 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_135 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_136 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_137 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_138 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_139 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_140 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_141 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_142 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_143 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_144 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_145 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_146 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_147 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_148 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_149 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_150 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_151 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_152 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_154 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_155 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_156 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_157 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_158 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_159 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_160 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_161 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_162 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_163 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_164 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_165 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_166 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_167 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_168 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_169 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_170 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_171 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_172 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_173 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_174 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_175 | 1.0 | 0.0 | 1.0 |
| JJKAAGEL_176 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_180 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_191 | 0.0 | 1.0 | 0.0 |
| JJKAAGEL_202 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJKAAGEL_1 | 94047 | 97677 | False | Siphoviridae | VOG0275, |
| JJKAAGEL_2 | 23622 | 39349 | False | Unknown | VOG4568, |
| JJKAAGEL_2 | 78365 | 87381 | False | Myoviridae | / |
| JJKAAGEL_2 | 94278 | 108309 | False | Siphoviridae | VOG4571, |
| JJKAAGEL_113 | 20920 | 35439 | False | Unknown | VOG10147, |
Phigaro v2.4.0 (Database: Jan. 2024 release)