Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIOEPEAJ_1 | 243125 | 244027 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| GIOEPEAJ_1 | 220871 | 222076 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| GIOEPEAJ_67 | 209078 | 211052 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| GIOEPEAJ_13 | 8233 | 9198 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GIOEPEAJ_1 | 243125 | 244027 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| GIOEPEAJ_67 | 209126 | 211051 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| GIOEPEAJ_13 | 8233 | 9198 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| GIOEPEAJ_13 | 8233 | 9198 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| GIOEPEAJ_13 | 8233 | 9198 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| GIOEPEAJ_13 | 8233 | 9198 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIOEPEAJ_1 | 243125 | 244024 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| GIOEPEAJ_13 | 8236 | 9198 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| GIOEPEAJ_67 | 209126 | 211048 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| GIOEPEAJ_1 | 220337 | 220846 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| GIOEPEAJ_1 | 220874 | 222076 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIOEPEAJ_1 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_2 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_3 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_4 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_5 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_6 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_7 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_8 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_9 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_10 | 1.0 | 0.0 | 1.0 |
| GIOEPEAJ_11 | 1.0 | 0.0 | 1.0 |
| GIOEPEAJ_12 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_13 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_15 | 1.0 | 0.0 | 1.0 |
| GIOEPEAJ_16 | 1.0 | 0.0 | 1.0 |
| GIOEPEAJ_17 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_23 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_34 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_45 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_56 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_67 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_77 | 0.0 | 1.0 | 0.0 |
| GIOEPEAJ_78 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIOEPEAJ_1 | 311568 | 318292 | False | Unknown | VOG4568, |
| GIOEPEAJ_34 | 373114 | 378989 | False | Siphoviridae | VOG7238, |
| GIOEPEAJ_56 | 42431 | 48282 | False | Myoviridae | VOG11032, |
Phigaro v2.4.0 (Database: Jan. 2024 release)