Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JBKHPGCF_1 | 438127 | 438927 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| JBKHPGCF_1 | 430548 | 432473 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JBKHPGCF_1 | 438127 | 438927 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| JBKHPGCF_1 | 430548 | 432473 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JBKHPGCF_1 | 438130 | 438927 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| JBKHPGCF_1 | 430551 | 432473 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JBKHPGCF_98 | 823 | 1502 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JBKHPGCF_1 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_2 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_13 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_24 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_35 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_46 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_47 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_48 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_49 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_50 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_51 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_52 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_53 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_54 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_55 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_56 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_57 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_58 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_59 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_60 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_61 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_62 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_63 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_64 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_65 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_66 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_67 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_68 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_69 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_70 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_71 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_72 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_73 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_74 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_75 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_76 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_77 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_78 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_79 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_80 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_81 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_82 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_83 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_84 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_85 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_86 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_87 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_88 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_89 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_90 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_91 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_92 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_93 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_94 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_95 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_96 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_97 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_98 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_99 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_100 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_101 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_103 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_104 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_106 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_107 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_108 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_109 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_110 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_111 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_112 | 1.0 | 0.0 | 1.0 |
| JBKHPGCF_118 | 0.0 | 1.0 | 0.0 |
| JBKHPGCF_129 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JBKHPGCF_49 | 71280 | 80338 | False | Unknown | VOG6183, |
| JBKHPGCF_53 | 19183 | 29586 | False | Siphoviridae | VOG0749, |
| JBKHPGCF_74 | 305669 | 318624 | False | Siphoviridae | VOG4690, |
| JBKHPGCF_96 | 18657 | 29260 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)