Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FKMDODOB_215 | 145215 | 145952 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FKMDODOB_215 | 145215 | 145952 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FKMDODOB_215 | 145218 | 145952 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FKMDODOB_1 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_2 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_11 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_22 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_33 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_43 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_53 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_64 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_75 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_84 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_95 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_106 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_107 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_118 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_129 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_140 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_151 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_160 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_171 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_182 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_193 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_204 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_215 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_216 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_227 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_238 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_243 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_244 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_245 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_246 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_247 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_248 | 1.0 | 0.0 | 1.0 |
| FKMDODOB_249 | 1.0 | 0.0 | 1.0 |
| FKMDODOB_250 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_251 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_252 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_253 | 1.0 | 0.0 | 1.0 |
| FKMDODOB_254 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_255 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_256 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_257 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_258 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_259 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_260 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_261 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_262 | 1.0 | 0.0 | 1.0 |
| FKMDODOB_263 | 1.0 | 0.0 | 1.0 |
| FKMDODOB_264 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_265 | 1.0 | 0.0 | 1.0 |
| FKMDODOB_267 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_268 | 1.0 | 0.0 | 1.0 |
| FKMDODOB_272 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_283 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_294 | 0.0 | 1.0 | 0.0 |
| FKMDODOB_305 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FKMDODOB_84 | 26631 | 49635 | True | Unknown | VOG9234, |
| FKMDODOB_106 | 190307 | 199935 | False | Myoviridae | / |
| FKMDODOB_215 | 142297 | 151885 | False | Siphoviridae | VOG0090, |
| FKMDODOB_250 | 71788 | 79326 | False | Siphoviridae | VOG0181, |
Phigaro v2.4.0 (Database: Jan. 2024 release)