Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MPBGEHGH_111 | 312511 | 313248 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| MPBGEHGH_166 | 53997 | 54899 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| MPBGEHGH_105 | 10460 | 12385 | tet(Q) | ARO:3000191 | tet(Q) | 96.26 | 97.56 | Z21523.1 |
| MPBGEHGH_103 | 6986 | 8911 | tet(Q) | ARO:3000191 | tet(Q) | 97.97 | 97.56 | Z21523.1 |
| MPBGEHGH_155 | 185 | 1150 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MPBGEHGH_155 | 185 | 1150 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| MPBGEHGH_155 | 185 | 1150 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| MPBGEHGH_155 | 185 | 1150 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| MPBGEHGH_155 | 185 | 1150 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| MPBGEHGH_166 | 53997 | 54899 | cepA-49 | Unknown Beta-lactam | 99.78 | 100.00 | U05886 |
| MPBGEHGH_105 | 10460 | 12385 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.69 | 100.00 | L33696 |
| MPBGEHGH_111 | 312511 | 313248 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MPBGEHGH_79 | 87090 | 87995 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| MPBGEHGH_155 | 185 | 1147 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| MPBGEHGH_166 | 53997 | 54896 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
| MPBGEHGH_105 | 10463 | 12385 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.38 | 100.00 | WP_063856407.1 |
| MPBGEHGH_111 | 312511 | 313245 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 100.00 | WP_002292226.1 |
| MPBGEHGH_103 | 6989 | 8911 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.97 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MPBGEHGH_116 | 465 | 1144 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MPBGEHGH_1 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_2 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_13 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_24 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_35 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_46 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_57 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_68 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_79 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_87 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_88 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_89 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_90 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_91 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_92 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_93 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_94 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_95 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_96 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_97 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_98 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_99 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_100 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_101 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_102 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_103 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_104 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_105 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_106 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_107 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_108 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_109 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_110 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_111 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_112 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_113 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_114 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_115 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_116 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_117 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_118 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_119 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_120 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_121 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_122 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_123 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_124 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_125 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_126 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_127 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_128 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_130 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_131 | 1.0 | 0.0 | 1.0 |
| MPBGEHGH_132 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_133 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_144 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_155 | 0.0 | 1.0 | 0.0 |
| MPBGEHGH_166 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)