Probiotic potential risk score


ARGs VFs PGs PPRS
1001.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
CIFPCMFK_2791731919244tet(Q)ARO:3000191tet(Q)97.0497.56Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
CIFPCMFK_2791731919244tet(Q)Doxycycline, Tetracycline, Minocycline100.00100.00X58717

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
CIFPCMFK_2791732219244tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)EXACTX100.00100.00WP_004293868.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
CIFPCMFK_10.01.00.0
CIFPCMFK_20.01.00.0
CIFPCMFK_130.01.00.0
CIFPCMFK_240.01.00.0
CIFPCMFK_350.01.00.0
CIFPCMFK_460.01.00.0
CIFPCMFK_570.01.00.0
CIFPCMFK_680.01.00.0
CIFPCMFK_790.01.00.0
CIFPCMFK_900.01.00.0
CIFPCMFK_1010.01.00.0
CIFPCMFK_1120.01.00.0
CIFPCMFK_1130.01.00.0
CIFPCMFK_1240.01.00.0
CIFPCMFK_1350.01.00.0
CIFPCMFK_1460.01.00.0
CIFPCMFK_1570.01.00.0
CIFPCMFK_1680.01.00.0
CIFPCMFK_1790.01.00.0
CIFPCMFK_1900.01.00.0
CIFPCMFK_2010.01.00.0
CIFPCMFK_2120.01.00.0
CIFPCMFK_2230.01.00.0
CIFPCMFK_2240.01.00.0
CIFPCMFK_2350.01.00.0
CIFPCMFK_2460.01.00.0
CIFPCMFK_2570.01.00.0
CIFPCMFK_2680.01.00.0
CIFPCMFK_2790.01.00.0
CIFPCMFK_2900.01.00.0
CIFPCMFK_3010.01.00.0
CIFPCMFK_3121.00.01.0
CIFPCMFK_3230.01.00.0
CIFPCMFK_3340.01.00.0
CIFPCMFK_3350.01.00.0
CIFPCMFK_3460.01.00.0
CIFPCMFK_3570.01.00.0
CIFPCMFK_3681.00.01.0
CIFPCMFK_3740.01.00.0
CIFPCMFK_3750.01.00.0
CIFPCMFK_3760.01.00.0
CIFPCMFK_3781.00.01.0
CIFPCMFK_3791.00.01.0
CIFPCMFK_3800.01.00.0
CIFPCMFK_3811.00.01.0
CIFPCMFK_3821.00.01.0
CIFPCMFK_3831.00.01.0
CIFPCMFK_3840.01.00.0
CIFPCMFK_3850.01.00.0
CIFPCMFK_3861.00.01.0
CIFPCMFK_3870.01.00.0
CIFPCMFK_3881.00.01.0
CIFPCMFK_3890.01.00.0
CIFPCMFK_3910.01.00.0
CIFPCMFK_4020.01.00.0
CIFPCMFK_4130.01.00.0
CIFPCMFK_4240.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
CIFPCMFK_223333031334511FalseUnknownVOG9667,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements