Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BKDGDBGM_13 | 267132 | 268484 | tet(Q) | ARO:3000191 | tet(Q) | 96.00 | 68.49 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BKDGDBGM_13 | 267132 | 269058 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
| BKDGDBGM_41 | 209601 | 210400 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.63 | 99.88 | M62487 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BKDGDBGM_13 | 267135 | 268541 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 98.93 | 73.17 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BKDGDBGM_40 | 524414 | 525994 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.72 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BKDGDBGM_1 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_2 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_3 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_4 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_5 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_6 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_7 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_8 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_9 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_10 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_11 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_12 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_13 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_14 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_15 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_16 | 1.0 | 0.0 | 1.0 |
| BKDGDBGM_17 | 1.0 | 0.0 | 1.0 |
| BKDGDBGM_18 | 1.0 | 0.0 | 1.0 |
| BKDGDBGM_19 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_20 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_21 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_22 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_23 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_24 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_25 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_26 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_27 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_28 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_29 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_30 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_31 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_32 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_33 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_34 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_35 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_37 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_38 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_39 | 1.0 | 0.0 | 1.0 |
| BKDGDBGM_40 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_41 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_42 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_43 | 0.0 | 1.0 | 0.0 |
| BKDGDBGM_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)