Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KDAMFCNN_22 | 22187 | 21993 | CspA | 2.16e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KDAMFCNN_44 | 33840 | 34814 | repUS67 | 980 / 1039 | 89.49 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KDAMFCNN_1 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_2 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_3 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_4 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_5 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_6 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_7 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_8 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_9 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_10 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_11 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_12 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_13 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_14 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_15 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_16 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_17 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_18 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_19 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_20 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_21 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_22 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_23 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_24 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_25 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_26 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_27 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_28 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_29 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_30 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_31 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_32 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_33 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_34 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_35 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_36 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_37 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_38 | 1.0 | 0.0 | 1.0 |
| KDAMFCNN_39 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_40 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_41 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_42 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_43 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_44 | 1.0 | 0.0 | 1.0 |
| KDAMFCNN_45 | 1.0 | 0.0 | 1.0 |
| KDAMFCNN_46 | 1.0 | 0.0 | 1.0 |
| KDAMFCNN_47 | 1.0 | 0.0 | 1.0 |
| KDAMFCNN_48 | 1.0 | 0.0 | 1.0 |
| KDAMFCNN_49 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_51 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_52 | 1.0 | 0.0 | 1.0 |
| KDAMFCNN_54 | 1.0 | 0.0 | 1.0 |
| KDAMFCNN_55 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_57 | 1.0 | 0.0 | 1.0 |
| KDAMFCNN_58 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_59 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_60 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_61 | 0.0 | 1.0 | 0.0 |
| KDAMFCNN_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KDAMFCNN_10 | 939 | 28999 | False | Siphoviridae | VOG0648, VOG7145, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689, VOG0686, VOG0198 |
| KDAMFCNN_10 | 32862 | 40492 | False | Siphoviridae | VOG4566, VOG9438, VOG0514, VOG0226, VOG0322, VOG0535, VOG11077, VOG5878, VOG1638, VOG1776 |
| KDAMFCNN_11 | 99658 | 105445 | False | Siphoviridae | VOG9667, VOG1563, VOG9706, VOG5878, VOG0195, VOG0275, VOG5278, VOG5998 |
| KDAMFCNN_11 | 107966 | 131583 | False | Siphoviridae | VOG0686, VOG0198, VOG0195, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462 |
| KDAMFCNN_44 | 10725 | 26572 | False | Siphoviridae | VOG0753, VOG0648, VOG0565, VOG10609, VOG4783, VOG5534, VOG7628, VOG7629, VOG6036, VOG6941, VOG6246, VOG6524 |
Phigaro v2.4.0 (Database: Jan. 2024 release)