Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HILFDMDG_11 | 103457 | 103263 | CspA | 2.27e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HILFDMDG_1 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_2 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_3 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_4 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_5 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_6 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_7 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_8 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_9 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_10 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_11 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_12 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_13 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_14 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_15 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_16 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_17 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_18 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_19 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_20 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_21 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_22 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_23 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_24 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_25 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_26 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_27 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_28 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_29 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_30 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_31 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_32 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_33 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_34 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_35 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_36 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_37 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_38 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_39 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_40 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_41 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_42 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_44 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_46 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_47 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_48 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_49 | 1.0 | 0.0 | 1.0 |
| HILFDMDG_50 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_51 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_52 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_53 | 0.0 | 1.0 | 0.0 |
| HILFDMDG_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HILFDMDG_11 | 16975 | 44366 | True | Siphoviridae | VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9409, VOG0221, VOG0221, VOG9671, VOG0350, VOG1844 |
| HILFDMDG_13 | 5944 | 10779 | False | Siphoviridae | VOG4548, VOG0322, VOG6545, VOG4632 |
| HILFDMDG_13 | 12755 | 35142 | False | Siphoviridae | VOG1183, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG5007, VOG0648 |
Phigaro v2.4.0 (Database: Jan. 2024 release)