Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ALMNBMOB_22 | 115066 | 114362 | WalR | 1.24e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| ALMNBMOB_27 | 13929 | 14126 | CspR | 3.92e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ALMNBMOB_53 | 1418 | 2476 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ALMNBMOB_1 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_2 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_3 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_4 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_5 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_6 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_7 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_8 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_9 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_10 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_11 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_12 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_13 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_14 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_15 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_16 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_17 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_18 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_19 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_20 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_21 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_22 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_23 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_24 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_25 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_26 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_27 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_28 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_29 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_30 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_31 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_32 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_33 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_34 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_35 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_36 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_37 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_38 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_39 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_40 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_41 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_42 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_43 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_44 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_45 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_46 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_47 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_48 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_49 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_50 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_51 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_52 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_53 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_54 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_55 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_56 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_57 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_58 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_59 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_60 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_61 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_62 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_63 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_64 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_65 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_66 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_68 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_69 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_70 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_71 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_72 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_73 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_74 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_75 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_77 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_78 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_79 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_80 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_81 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_82 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_83 | 1.0 | 0.0 | 1.0 |
| ALMNBMOB_84 | 0.0 | 1.0 | 0.0 |
| ALMNBMOB_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ALMNBMOB_11 | 34315 | 43388 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| ALMNBMOB_18 | 1439 | 24450 | False | Siphoviridae | VOG0703, VOG1637, VOG4705, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG0198, VOG3307 |
| ALMNBMOB_18 | 25785 | 35854 | False | Unknown | VOG6623, VOG0189, VOG4566, VOG0186, VOG1309, VOG8241, VOG7236, VOG6495, VOG11003, VOG11003, VOG6179, VOG4965, VOG1333, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)