Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 8 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNGBEAJH_272 | 1127 | 1987 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LNGBEAJH_272 | 1127 | 1987 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNGBEAJH_272 | 1130 | 1987 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LNGBEAJH_258 | 17045 | 18196 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| LNGBEAJH_914 | 4686 | 5555 | pdxS | 8.40e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| LNGBEAJH_1 | 142987 | 142211 | CodY | 2.02e-127 | nutrient-responsive regulator | 81.47 | 100.00 | ACJ80679 |
| LNGBEAJH_1 | 142987 | 142211 | codY | 4.89e-124 | global regulator and isoleucine sensor | 80.31 | 100.00 | ASW39076 |
| LNGBEAJH_535 | 76535 | 77104 | ClpP | 4.07e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| LNGBEAJH_224 | 368 | 760 | spxA1 | 3.76e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| LNGBEAJH_224 | 368 | 760 | spx | 8.13e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| LNGBEAJH_113 | 18330 | 18572 | SpoVG | 1.95e-39 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| LNGBEAJH_366 | 489 | 292 | CspA | 6.51e-35 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| LNGBEAJH_366 | 489 | 295 | CspR | 2.74e-31 | cold shock protein | 81.54 | 98.48 | AAO82613 |
| LNGBEAJH_1 | 35794 | 35988 | CspD | 2.88e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| LNGBEAJH_1 | 35794 | 35991 | CspB | 1.94e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LNGBEAJH_272 | 570 | 657 | ColRNAI | 88 / 130 | 93.18 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LNGBEAJH_1 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_2 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_3 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_14 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_25 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_36 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_47 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_58 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_69 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_80 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_91 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_102 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_113 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_114 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_125 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_136 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_147 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_158 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_169 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_180 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_191 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_202 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_213 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_224 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_225 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_236 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_247 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_251 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_252 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_253 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_254 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_256 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_257 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_258 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_259 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_260 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_261 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_262 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_263 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_264 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_265 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_266 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_267 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_269 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_270 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_271 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_272 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_274 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_276 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_277 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_279 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_280 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_283 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_284 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_285 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_287 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_289 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_292 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_294 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_295 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_296 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_298 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_299 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_300 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_301 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_302 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_307 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_311 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_313 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_321 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_330 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_331 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_342 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_352 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_362 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_373 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_383 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_394 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_404 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_414 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_425 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_435 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_436 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_445 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_455 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_466 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_475 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_486 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_496 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_505 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_515 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_524 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_535 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_536 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_547 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_558 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_568 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_579 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_590 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_600 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_608 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_618 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_628 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_638 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_639 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_648 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_659 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_668 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_679 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_689 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_699 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_710 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_720 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_731 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_742 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_743 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_753 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_764 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_775 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_786 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_797 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_807 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_818 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_828 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_839 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_850 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_851 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_862 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_871 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_882 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_893 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_903 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_914 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_924 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_935 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_945 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_956 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_957 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_968 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_978 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_989 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_999 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_1010 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1021 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1032 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1043 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1054 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1065 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1066 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1077 | 1.0 | 0.0 | 1.0 |
| LNGBEAJH_1088 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1099 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1110 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1121 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1132 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1143 | 0.0 | 1.0 | 0.0 |
| LNGBEAJH_1154 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)