Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGDADLMN_63 | 1665 | 2714 | clbA | ARO:3002814 | clbA | 99.14 | 100.00 | CP006845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGDADLMN_63 | 1665 | 2700 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.61 | 98.67 | KR610408 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGDADLMN_63 | 1665 | 2711 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.14 | 100.00 | WP_012116915.1 |
| KGDADLMN_51 | 10438 | 13032 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.11 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KGDADLMN_36 | 20609 | 21790 | capB | 0.0 | Capsule | Immune modulation | 82.12 | 99.66 | NP_391471 |
| KGDADLMN_36 | 20145 | 20594 | capC | 1.53e-115 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KGDADLMN_22 | 27967 | 26831 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| KGDADLMN_70 | 12464 | 11595 | pdxS | 1.35e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KGDADLMN_62 | 15482 | 14706 | CodY | 2.35e-126 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KGDADLMN_3 | 122606 | 122998 | spxA1 | 2.77e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KGDADLMN_52 | 16325 | 16522 | CspA | 1.71e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KGDADLMN_35 | 15107 | 14913 | CspD | 1.12e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| KGDADLMN_35 | 15107 | 14910 | CspB | 2.32e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| KGDADLMN_52 | 16325 | 16519 | CspR | 2.24e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KGDADLMN_19 | 1176 | 2048 | lipA (SAUSA300_0829) | 1.93e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGDADLMN_1 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_2 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_3 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_4 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_5 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_6 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_7 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_8 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_9 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_10 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_11 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_12 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_13 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_14 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_15 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_16 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_17 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_18 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_19 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_20 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_21 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_22 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_23 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_24 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_25 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_26 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_27 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_28 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_29 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_30 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_31 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_32 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_33 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_34 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_35 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_36 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_37 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_38 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_39 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_40 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_41 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_42 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_43 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_44 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_45 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_46 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_47 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_48 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_49 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_50 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_51 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_52 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_53 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_54 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_55 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_56 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_57 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_58 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_59 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_60 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_61 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_62 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_63 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_64 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_65 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_66 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_67 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_68 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_69 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_70 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_71 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_72 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_73 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_74 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_75 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_76 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_77 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_78 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_79 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_80 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_81 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_82 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_83 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_84 | 1.0 | 0.0 | 1.0 |
| KGDADLMN_85 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_86 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_87 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_88 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_89 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_90 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_91 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_92 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_93 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_94 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_95 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_96 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_97 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_98 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_99 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_100 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_101 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_102 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_103 | 1.0 | 0.0 | 1.0 |
| KGDADLMN_104 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_105 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_106 | 1.0 | 0.0 | 1.0 |
| KGDADLMN_107 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_109 | 1.0 | 0.0 | 1.0 |
| KGDADLMN_110 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_111 | 1.0 | 0.0 | 1.0 |
| KGDADLMN_112 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_113 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_114 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_115 | 1.0 | 0.0 | 1.0 |
| KGDADLMN_116 | 1.0 | 0.0 | 1.0 |
| KGDADLMN_117 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_118 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_119 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_120 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_121 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_122 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_123 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_124 | 0.0 | 1.0 | 0.0 |
| KGDADLMN_125 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KGDADLMN_10 | 47218 | 49903 | False | Unknown | VOG9667, VOG9667, VOG0650, VOG4552 |
| KGDADLMN_10 | 60376 | 85177 | False | Siphoviridae | VOG4581, VOG1886, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG4660, VOG4612, VOG3390, VOG7896, VOG0641, VOG10230 |
| KGDADLMN_57 | 14519 | 22178 | False | Myoviridae | VOG0753, VOG4705, VOG3390, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885 |
Phigaro v2.4.0 (Database: Jan. 2024 release)