Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PJJKENGK_22 | 43808 | 42630 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| PJJKENGK_128 | 86477 | 87982 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| PJJKENGK_145 | 7647 | 6778 | pdxS | 1.11e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| PJJKENGK_77 | 59059 | 59835 | CodY | 1.09e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| PJJKENGK_77 | 59059 | 59835 | codY | 5.27e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| PJJKENGK_116 | 27805 | 27236 | ClpP | 1.21e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| PJJKENGK_93 | 37941 | 38627 | WalR | 6.99e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| PJJKENGK_150 | 8146 | 7754 | spxA1 | 7.97e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| PJJKENGK_150 | 8146 | 7754 | spx | 1.72e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| PJJKENGK_97 | 33756 | 33514 | SpoVG | 8.01e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| PJJKENGK_102 | 9040 | 8843 | CspA | 6.19e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| PJJKENGK_117 | 46845 | 47039 | CspD | 2.98e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| PJJKENGK_117 | 46845 | 47042 | CspB | 2.00e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJJKENGK_1 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_2 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_3 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_4 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_5 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_6 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_7 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_8 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_10 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_11 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_12 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_14 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_15 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_22 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_33 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_44 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_55 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_66 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_77 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_87 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_93 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_94 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_95 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_96 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_97 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_98 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_99 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_100 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_101 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_102 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_103 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_104 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_105 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_106 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_107 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_108 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_109 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_110 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_111 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_112 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_113 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_114 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_115 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_116 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_117 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_118 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_119 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_120 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_121 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_122 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_123 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_124 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_125 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_126 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_127 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_128 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_129 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_130 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_131 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_132 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_133 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_134 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_135 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_136 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_137 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_138 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_139 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_140 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_141 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_142 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_143 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_144 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_145 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_146 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_147 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_148 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_149 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_150 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_151 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_152 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_153 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_154 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_155 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_156 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_157 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_158 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_159 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_160 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_161 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_162 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_163 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_164 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_165 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_166 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_167 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_168 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_169 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_170 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_171 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_172 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_173 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_174 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_175 | 0.0 | 1.0 | 0.0 |
| PJJKENGK_176 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_177 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_178 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_179 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_180 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_181 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_182 | 1.0 | 0.0 | 1.0 |
| PJJKENGK_183 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJJKENGK_96 | 17854 | 49315 | False | Siphoviridae | VOG4660, VOG6373, VOG4619, VOG0801, VOG6163, VOG4557, VOG5660, VOG3888, VOG1581, VOG4711, VOG3210, VOG4568, VOG7708, VOG7407, VOG0611, VOG0198, VOG8445, VOG3553, VOG1298, VOG6440, VOG0195, VOG0536, VOG0397, VOG9996, VOG0025, VOG9600, VOG4855, VOG1309, VOG4600, VOG1878, VOG3549, VOG8241, VOG4552, VOG9667, VOG9667 |
| PJJKENGK_139 | 20782 | 61846 | False | Siphoviridae | VOG6778, VOG0275, VOG4602, VOG4548, VOG0982, VOG9858, VOG9667, VOG11075, VOG6495, VOG0181, VOG1878, VOG4690, VOG8647, VOG0226, VOG4552, VOG0198, VOG0275, VOG4841, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)