Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 4 | 16.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AINGPGAD_1 | 2514349 | 2515203 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
| AINGPGAD_1 | 2497274 | 2498476 | blt | ARO:3003006 | blt | 98.50 | 100.00 | L32599.1 |
| AINGPGAD_1 | 2271789 | 2272958 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| AINGPGAD_1 | 1373708 | 1374025 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| AINGPGAD_1 | 1373370 | 1373708 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| AINGPGAD_1 | 902514 | 905087 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.12 | AL009126.3 |
| AINGPGAD_1 | 617947 | 619590 | vmlR | ARO:3004476 | vmlR | 98.35 | 100.00 | NC_000964.3 |
| AINGPGAD_1 | 365075 | 365668 | tmrB | ARO:3003059 | tmrB | 96.95 | 100.00 | AL009126.3 |
| AINGPGAD_1 | 314808 | 316241 | lmrB | ARO:3002813 | lmrB | 99.16 | 100.00 | JYFL01000006.1 |
| AINGPGAD_1 | 284505 | 285425 | mphK | ARO:3004541 | mphK | 97.39 | 100.00 | CP010314.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AINGPGAD_1 | 4020058 | 4021434 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.35 | 100.00 | X08034 |
| AINGPGAD_1 | 2514351 | 2515203 | aadK | Streptomycin | 98.59 | 99.77 | M26879 |
| AINGPGAD_1 | 284505 | 285425 | mph(K) | Spiramycin, Telithromycin | 97.50 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AINGPGAD_1 | 4020061 | 4021434 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_003242953.1 |
| AINGPGAD_1 | 617950 | 619590 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.35 | 100.00 | WP_003234144.1 |
| AINGPGAD_1 | 2514352 | 2515203 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| AINGPGAD_1 | 284505 | 285422 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.39 | 100.00 | WP_003246254.1 |
| AINGPGAD_1 | 4017511 | 4018029 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.64 | 100.00 | WP_003242546.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| AINGPGAD_1 | 3517630 | 3518811 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| AINGPGAD_1 | 3516005 | 3517147 | capA | 0.0 | Capsule | Immune modulation | 99.65 | 100.00 | NP_391469 |
| AINGPGAD_1 | 3517166 | 3517615 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| AINGPGAD_1 | 2066440 | 2067081 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| AINGPGAD_1 | 3107965 | 3108750 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| AINGPGAD_1 | 3104140 | 3105078 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.04 | 100.00 | NP_391077 |
| AINGPGAD_1 | 1900227 | 1901990 | dep/capD | 0.0 | Capsule | Immune modulation | 98.92 | 100.00 | NP_389723 |
| AINGPGAD_1 | 3096984 | 3104120 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.63 | 100.00 | NP_391076 |
| AINGPGAD_1 | 3106743 | 3107939 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.33 | 100.00 | NP_391079 |
| AINGPGAD_1 | 3105106 | 3106725 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AINGPGAD_1 | 132467 | 133603 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| AINGPGAD_1 | 18665 | 19534 | pdxS | 3.01e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| AINGPGAD_1 | 1687913 | 1688689 | CodY | 3.29e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| AINGPGAD_1 | 3371987 | 3372556 | ClpP | 2.44e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AINGPGAD_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AINGPGAD_1 | 1317551 | 1343883 | False | Myoviridae | VOG4602, VOG9667, VOG4995, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG5384, VOG4705 |
| AINGPGAD_1 | 2446097 | 2479487 | False | Myoviridae | VOG7718, VOG0944, VOG5532, VOG4862, VOG4691, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG4870, VOG4589, VOG0749, VOG4685, VOG4688, VOG4773, VOG10227, VOG0796, VOG4662, VOG4673, VOG0143, VOG4693, VOG0189, VOG11060, VOG1309 |
| AINGPGAD_1 | 2669713 | 2695471 | False | Myoviridae | VOG0221, VOG6116, VOG6422, VOG4574, VOG0136, VOG0753, VOG4705, VOG3390, VOG7718, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4623, VOG4564, VOG4553, VOG4555, VOG0720 |
Phigaro v2.4.0 (Database: Jan. 2024 release)