Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 0 | 0 | 11.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHGINJAJ_1 | 6636921 | 6637853 | CfxA2 | ARO:3003002 | CfxA2 | 99.68 | 96.57 | AF118110.1 |
| OHGINJAJ_1 | 4681978 | 4682910 | CfxA2 | ARO:3003002 | CfxA2 | 99.68 | 96.57 | AF118110.1 |
| OHGINJAJ_1 | 4504838 | 4505803 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| OHGINJAJ_1 | 3224937 | 3225728 | aadS | ARO:3004683 | aadS | 100.00 | 91.64 | M72415.1 |
| OHGINJAJ_1 | 3223625 | 3224761 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| OHGINJAJ_1 | 3222287 | 3223426 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| OHGINJAJ_1 | 3221180 | 3221980 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| OHGINJAJ_1 | 3203456 | 3205342 | tet(Q) | ARO:3000191 | tet(Q) | 96.97 | 95.59 | Z21523.1 |
| OHGINJAJ_1 | 2405882 | 2407807 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| OHGINJAJ_1 | 2061550 | 2062482 | CfxA2 | ARO:3003002 | CfxA2 | 99.68 | 96.57 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OHGINJAJ_1 | 3203416 | 3205342 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | X58717 |
| OHGINJAJ_1 | 4504838 | 4505803 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| OHGINJAJ_1 | 4504838 | 4505803 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| OHGINJAJ_1 | 4504838 | 4505803 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| OHGINJAJ_1 | 4504838 | 4505803 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| OHGINJAJ_1 | 3221180 | 3221980 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| OHGINJAJ_1 | 3223595 | 3224761 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHGINJAJ_1 | 4504838 | 4505800 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| OHGINJAJ_1 | 3223595 | 3224758 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| OHGINJAJ_1 | 3203462 | 3205342 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 100.00 | 97.82 | WP_004293868.1 |
| OHGINJAJ_1 | 3224937 | 3225722 | aadS | aminoglycoside 6-adenylyltransferase AadS | BLASTX | 100.00 | 91.29 | WP_003013318.1 |
| OHGINJAJ_1 | 3222287 | 3223423 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| OHGINJAJ_1 | 3221183 | 3221980 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| OHGINJAJ_1 | 2405882 | 2407804 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| OHGINJAJ_1 | 4681981 | 4682937 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.37 | 99.38 | WP_004339683.1 |
| OHGINJAJ_1 | 2061553 | 2062512 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.06 | 99.69 | WP_004339683.1 |
| OHGINJAJ_1 | 6636891 | 6637850 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 98.75 | 99.69 | WP_004339683.1 |
| OHGINJAJ_1 | 6690910 | 6691860 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.60 | 98.75 | WP_004339683.1 |
| OHGINJAJ_1 | 202172 | 202729 | cepA | CepA family extended-spectrum class A beta-lactamase | PARTIALX | 81.72 | 62.00 | WP_005816369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OHGINJAJ_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OHGINJAJ_1 | 175902 | 180738 | False | Unknown | VOG5023, |
| OHGINJAJ_1 | 4067470 | 4068637 | False | Unknown | VOG1356 |
| OHGINJAJ_1 | 4498425 | 4502023 | False | Unknown | VOG0049, |
| OHGINJAJ_1 | 5468142 | 5483248 | False | Unknown | VOG4572, |
| OHGINJAJ_1 | 5926129 | 5929599 | False | Myoviridae | VOG5380, |
Phigaro v2.4.0 (Database: Jan. 2024 release)