Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JAPMOKMC_1 | 6412014 | 6413960 | tet(Q) | ARO:3000191 | tet(Q) | 97.81 | 98.63 | Z21523.1 |
| JAPMOKMC_1 | 5822022 | 5822822 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| JAPMOKMC_1 | 360471 | 361436 | CfxA6 | ARO:3003097 | CfxA6 | 97.18 | 96.98 | GQ342996.1 |
| JAPMOKMC_1 | 175405 | 177330 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JAPMOKMC_1 | 5822022 | 5822822 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| JAPMOKMC_1 | 6412014 | 6413926 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.74542603240982 | 99.33 | L33696 |
| JAPMOKMC_1 | 360436 | 361431 | cfxA6 | Unknown Beta-lactam | 98.40 | 99.60 | GQ342996 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JAPMOKMC_1 | 5822022 | 5822819 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| JAPMOKMC_1 | 6412014 | 6413927 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
| JAPMOKMC_1 | 360471 | 361427 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | BLASTX | 97.18 | 99.69 | WP_117664257.1 |
| JAPMOKMC_1 | 175405 | 177327 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JAPMOKMC_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JAPMOKMC_1 | 4312702 | 4315994 | False | Unknown | VOG8909, |
| JAPMOKMC_1 | 4821220 | 4837728 | False | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)