Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 14 | 0 | 0 | 14.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNLDJICM_1 | 5728104 | 5729243 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| NNLDJICM_1 | 5726769 | 5727905 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| NNLDJICM_1 | 5725730 | 5726593 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| NNLDJICM_1 | 3952134 | 3954059 | tet(Q) | ARO:3000191 | tet(Q) | 97.19 | 97.56 | Z21523.1 |
| NNLDJICM_1 | 206588 | 208562 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NNLDJICM_1 | 206588 | 208513 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| NNLDJICM_1 | 5726769 | 5727935 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| NNLDJICM_1 | 3527069 | 3527802 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.05 | 99.86 | M15332 |
| NNLDJICM_1 | 3521795 | 3523152 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.57 | 92.69 | AF274302 |
| NNLDJICM_1 | 3520455 | 3521669 | mef(A) | Erythromycin, Azithromycin | 94.40 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNLDJICM_1 | 5725733 | 5726593 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| NNLDJICM_1 | 1236286 | 1237191 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| NNLDJICM_1 | 1885102 | 1886007 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| NNLDJICM_1 | 4109909 | 4110814 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| NNLDJICM_1 | 6440548 | 6441453 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| NNLDJICM_1 | 206591 | 208513 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| NNLDJICM_1 | 5726772 | 5727935 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| NNLDJICM_1 | 1697662 | 1698318 | blaMUN | MUN family extended-spectrum class A beta-lactamase | PARTIALX | 100.00 | 72.52 | WP_206340447.1 |
| NNLDJICM_1 | 5728107 | 5729243 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| NNLDJICM_1 | 3527069 | 3527635 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | PARTIALX | 99.47 | 77.46 | WP_014387027.1 |
| NNLDJICM_1 | 3520455 | 3521678 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.28 | 100.00 | WP_012102963.1 |
| NNLDJICM_1 | 3952134 | 3954056 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.50 | 100.00 | WP_063856407.1 |
| NNLDJICM_1 | 3521958 | 3523151 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | PARTIALX | 96.73 | 81.72 | WP_000420317.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NNLDJICM_1 | 0.0 | 1.0 | 0.0 |
| NNLDJICM_2 | 0.0 | 1.0 | 0.0 |
| NNLDJICM_3 | 1.0 | 0.0 | 1.0 |
| NNLDJICM_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NNLDJICM_1 | 5640061 | 5648381 | False | Unknown | VOG5023, |
Phigaro v2.4.0 (Database: Jan. 2024 release)