Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 0 | 0 | 13.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJNIKNOK_6 | 1639304 | 1640470 | tet(X) | ARO:3000205 | tet(X) | 96.39 | 100.00 | M37699.1 |
| GJNIKNOK_6 | 1634776 | 1635852 | tet(X4) | ARO:3004720 | tet(X4) | 96.09 | 92.99 | MK134376.1 |
| GJNIKNOK_6 | 1455711 | 1456787 | tet(X4) | ARO:3004720 | tet(X4) | 96.09 | 92.99 | MK134376.1 |
| GJNIKNOK_6 | 530874 | 532799 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GJNIKNOK_6 | 530874 | 532799 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GJNIKNOK_6 | 1455711 | 1456834 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.8220640569395 | 96.32 | GU014535 |
| GJNIKNOK_6 | 1640680 | 1641481 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 100.00 | M62487 |
| GJNIKNOK_6 | 1618933 | 1619898 | cfxA4 | Unknown Beta-lactam | 99.38 | 99.90 | AY769933 |
| GJNIKNOK_6 | 1643438 | 1644656 | mef(A) | Erythromycin, Azithromycin | 94.67 | 99.92 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJNIKNOK_4 | 1733786 | 1734295 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GJNIKNOK_6 | 1455714 | 1456832 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 100.00 | 96.13 | WP_008651082.1 |
| GJNIKNOK_6 | 1634731 | 1635849 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 100.00 | 96.13 | WP_008651082.1 |
| GJNIKNOK_6 | 530877 | 532799 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GJNIKNOK_6 | 1637207 | 1637983 | estT | macrolide hydrolase EstT | BLASTX | 98.47 | 92.55 | WP_185148407.1 |
| GJNIKNOK_6 | 1618937 | 1619767 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | PARTIALX | 96.75 | 85.98 | WP_057280848.1 |
| GJNIKNOK_6 | 1639304 | 1640467 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 96.65 | 100.00 | WP_008651082.1 |
| GJNIKNOK_6 | 1640683 | 1641363 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | INTERNAL_STOP | 90.75 | 85.34 | WP_063844771.1 |
| GJNIKNOK_6 | 1451095 | 1452045 | tet(X4) | tetracycline-inactivating monooxygenase Tet(X4) | INTERNAL_STOP | 89.59 | 82.34 | WP_094309310.1 |
| GJNIKNOK_4 | 1734323 | 1735525 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | INTERNAL_STOP | 83.95 | 100.00 | WP_063853729.1 |
| GJNIKNOK_6 | 1454674 | 1455360 | aadS | aminoglycoside 6-adenylyltransferase AadS | INTERNAL_STOP | 81.20 | 79.79 | WP_003013318.1 |
| GJNIKNOK_6 | 1452421 | 1453260 | estT | macrolide hydrolase EstT | INTERNAL_STOP | 80.77 | 100.00 | WP_185148407.1 |
| GJNIKNOK_6 | 1453848 | 1454417 | estT | macrolide hydrolase EstT | PARTIALX | 100.00 | 67.38 | WP_185148407.1 |
| GJNIKNOK_7 | 49887 | 50459 | aadS | aminoglycoside 6-adenylyltransferase AadS | INTERNAL_STOP | 89.01 | 66.55 | WP_003013318.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GJNIKNOK_1 | 1443 | 2122 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJNIKNOK_1 | 1.0 | 0.0 | 1.0 |
| GJNIKNOK_2 | 1.0 | 0.0 | 1.0 |
| GJNIKNOK_3 | 0.0 | 1.0 | 0.0 |
| GJNIKNOK_4 | 0.0 | 1.0 | 0.0 |
| GJNIKNOK_5 | 0.0 | 1.0 | 0.0 |
| GJNIKNOK_6 | 0.0 | 1.0 | 0.0 |
| GJNIKNOK_7 | 1.0 | 0.0 | 1.0 |
| GJNIKNOK_8 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)