Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBPJCIPC_5 | 5302637 | 5303602 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| PBPJCIPC_5 | 3465831 | 3466796 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| PBPJCIPC_5 | 1921919 | 1923271 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 68.49 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PBPJCIPC_5 | 1921919 | 1923633 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.94 | 88.99 | Z21523 |
| PBPJCIPC_5 | 3465831 | 3466796 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBPJCIPC_5 | 3465834 | 3466796 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 99.69 | 100.00 | WP_004348227.1 |
| PBPJCIPC_5 | 5302637 | 5303599 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 99.69 | 100.00 | WP_004348227.1 |
| PBPJCIPC_5 | 1921919 | 1923241 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 100.00 | 68.80 | WP_002560998.1 |
| PBPJCIPC_1 | 5859 | 6461 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 99.00 | 62.62 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PBPJCIPC_3 | 1693 | 2372 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBPJCIPC_1 | 0.0 | 1.0 | 0.0 |
| PBPJCIPC_2 | 1.0 | 0.0 | 1.0 |
| PBPJCIPC_3 | 1.0 | 0.0 | 1.0 |
| PBPJCIPC_4 | 1.0 | 0.0 | 1.0 |
| PBPJCIPC_5 | 0.0 | 1.0 | 0.0 |
| PBPJCIPC_6 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBPJCIPC_5 | 4906244 | 4912924 | False | Siphoviridae | VOG4360, |
Phigaro v2.4.0 (Database: Jan. 2024 release)