Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLNNDFKA_12 | 3434803 | 3435537 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| GLNNDFKA_12 | 2044438 | 2045403 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| GLNNDFKA_8 | 723416 | 725341 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| GLNNDFKA_12 | 161521 | 162345 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GLNNDFKA_12 | 161521 | 162345 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| GLNNDFKA_12 | 2044438 | 2045403 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| GLNNDFKA_12 | 2044438 | 2045403 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| GLNNDFKA_12 | 2044438 | 2045403 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| GLNNDFKA_12 | 2044438 | 2045403 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| GLNNDFKA_12 | 3434803 | 3435537 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| GLNNDFKA_8 | 723416 | 725341 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 99.95 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLNNDFKA_12 | 161521 | 162342 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| GLNNDFKA_12 | 2044441 | 2045403 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| GLNNDFKA_12 | 3434806 | 3435537 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| GLNNDFKA_8 | 723416 | 725338 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
| GLNNDFKA_8 | 594092 | 595045 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 83.65 | 99.07 | WP_004348227.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GLNNDFKA_1 | 1.0 | 0.0 | 1.0 |
| GLNNDFKA_3 | 1.0 | 0.0 | 1.0 |
| GLNNDFKA_4 | 1.0 | 0.0 | 1.0 |
| GLNNDFKA_5 | 1.0 | 0.0 | 1.0 |
| GLNNDFKA_6 | 0.0 | 1.0 | 0.0 |
| GLNNDFKA_7 | 1.0 | 0.0 | 1.0 |
| GLNNDFKA_8 | 0.0 | 1.0 | 0.0 |
| GLNNDFKA_11 | 1.0 | 0.0 | 1.0 |
| GLNNDFKA_12 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GLNNDFKA_8 | 714544 | 720045 | True | Unknown | VOG0275, |
| GLNNDFKA_12 | 3481041 | 3490058 | False | Siphoviridae | VOG6488, |
| GLNNDFKA_12 | 3880146 | 3888022 | False | Unknown | VOG4855, |
| GLNNDFKA_12 | 4192155 | 4200919 | False | Siphoviridae | VOG4589, |
Phigaro v2.4.0 (Database: Jan. 2024 release)