Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AJOIIJFL_6 | 3040699 | 3041775 | tet(X4) | ARO:3004720 | tet(X4) | 97.49 | 92.99 | MK134376.1 |
| AJOIIJFL_6 | 3039689 | 3040489 | ErmF | ARO:3000498 | ErmF | 97.37 | 100.00 | M17124.1 |
| AJOIIJFL_6 | 1872659 | 1873624 | CfxA5 | ARO:3003096 | CfxA5 | 99.38 | 100.00 | AY769934.1 |
| AJOIIJFL_6 | 1106257 | 1107222 | CfxA5 | ARO:3003096 | CfxA5 | 100.00 | 100.00 | AY769934.1 |
| AJOIIJFL_6 | 930294 | 931499 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| AJOIIJFL_3 | 214084 | 216058 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AJOIIJFL_6 | 1106257 | 1107222 | cfxA5 | Unknown Beta-lactam | 100.00 | 100.00 | AY769934 |
| AJOIIJFL_3 | 214132 | 216057 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| AJOIIJFL_6 | 3039689 | 3040489 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 100.00 | M62487 |
| AJOIIJFL_6 | 3040699 | 3041822 | tet(X4) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 97.42 | 97.06 | MK134376 |
| AJOIIJFL_6 | 3036523 | 3037740 | mef(A) | Erythromycin, Azithromycin | 95.16 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AJOIIJFL_6 | 1106260 | 1107222 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | EXACTX | 100.00 | 100.00 | WP_032946415.1 |
| AJOIIJFL_3 | 214132 | 216054 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| AJOIIJFL_6 | 930294 | 931496 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| AJOIIJFL_6 | 931524 | 932033 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | INTERNAL_STOP | 99.41 | 100.00 | WP_004308783.1 |
| AJOIIJFL_6 | 1872659 | 1873621 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | BLASTX | 99.38 | 100.00 | WP_032946415.1 |
| AJOIIJFL_6 | 3039689 | 3040486 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_063844771.1 |
| AJOIIJFL_6 | 3036526 | 3037740 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 99.26 | WP_012102963.1 |
| AJOIIJFL_6 | 3040702 | 3041820 | tet(X4) | tetracycline-inactivating monooxygenase Tet(X4) | BLASTX | 97.59 | 96.88 | WP_094309310.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AJOIIJFL_1 | 1.0 | 0.0 | 1.0 |
| AJOIIJFL_2 | 1.0 | 0.0 | 1.0 |
| AJOIIJFL_3 | 0.0 | 1.0 | 0.0 |
| AJOIIJFL_4 | 0.0 | 1.0 | 0.0 |
| AJOIIJFL_5 | 0.0 | 1.0 | 0.0 |
| AJOIIJFL_6 | 0.0 | 1.0 | 0.0 |
| AJOIIJFL_7 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AJOIIJFL_3 | 559797 | 570285 | False | Unknown | VOG4572, |
| AJOIIJFL_3 | 1659417 | 1668051 | False | Unknown | VOG4573, |
| AJOIIJFL_5 | 451729 | 461148 | False | Siphoviridae | VOG0749, |
| AJOIIJFL_5 | 620884 | 628289 | False | Unknown | VOG0226, |
| AJOIIJFL_5 | 972332 | 982624 | False | Unknown | VOG4694, |
| AJOIIJFL_6 | 1576682 | 1584693 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)