Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEEINPAD_7 | 3158862 | 3159827 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| JEEINPAD_7 | 1954091 | 1956016 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| JEEINPAD_7 | 1559129 | 1560094 | CfxA5 | ARO:3003096 | CfxA5 | 100.00 | 100.00 | AY769934.1 |
| JEEINPAD_6 | 153684 | 154649 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JEEINPAD_7 | 1559129 | 1560094 | cfxA5 | Unknown Beta-lactam | 100.00 | 100.00 | AY769934 |
| JEEINPAD_7 | 1954091 | 1956016 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| JEEINPAD_6 | 153684 | 154649 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| JEEINPAD_6 | 153684 | 154649 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| JEEINPAD_6 | 153684 | 154649 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| JEEINPAD_7 | 2976107 | 2976907 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.25 | 99.88 | M17808 |
| JEEINPAD_7 | 154198 | 155409 | mef(A) | Erythromycin, Azithromycin | 94.83 | 99.51 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEEINPAD_7 | 1559129 | 1560091 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | EXACTX | 100.00 | 100.00 | WP_032946415.1 |
| JEEINPAD_6 | 153684 | 154646 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| JEEINPAD_7 | 3158862 | 3159824 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| JEEINPAD_7 | 1954094 | 1956016 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| JEEINPAD_7 | 2976112 | 2976864 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.80 | 94.36 | WP_002682030.1 |
| JEEINPAD_7 | 154198 | 155406 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.52 | 99.26 | WP_012102963.1 |
| JEEINPAD_2 | 5441 | 6034 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | INTERNAL_STOP | 81.31 | 60.44 | WP_032946415.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JEEINPAD_1 | 1.0 | 0.0 | 1.0 |
| JEEINPAD_2 | 0.0 | 1.0 | 0.0 |
| JEEINPAD_3 | 1.0 | 0.0 | 1.0 |
| JEEINPAD_4 | 1.0 | 0.0 | 1.0 |
| JEEINPAD_5 | 1.0 | 0.0 | 1.0 |
| JEEINPAD_6 | 0.0 | 1.0 | 0.0 |
| JEEINPAD_7 | 0.0 | 1.0 | 0.0 |
| JEEINPAD_8 | 1.0 | 0.0 | 1.0 |
| JEEINPAD_9 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JEEINPAD_6 | 558912 | 570902 | False | Unknown | VOG4568, |
| JEEINPAD_7 | 561713 | 567800 | False | Unknown | VOG8909, |
| JEEINPAD_7 | 2358772 | 2365422 | False | Unknown | VOG3699, |
Phigaro v2.4.0 (Database: Jan. 2024 release)