Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BBCNAAEE_5 | 4220122 | 4221513 | tet(Q) | ARO:3000191 | tet(Q) | 88.86 | 70.47 | Z21523.1 |
| BBCNAAEE_5 | 4219036 | 4219836 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| BBCNAAEE_5 | 1678535 | 1680509 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| BBCNAAEE_1 | 102844 | 104769 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BBCNAAEE_5 | 1678583 | 1680508 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| BBCNAAEE_5 | 2643255 | 2644221 | cfxA5 | Unknown Beta-lactam | 99.59 | 100.00 | AY769934 |
| BBCNAAEE_5 | 4219036 | 4219836 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BBCNAAEE_5 | 1678583 | 1680505 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| BBCNAAEE_5 | 2643255 | 2643998 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 99.60 | 77.26 | WP_004339683.1 |
| BBCNAAEE_1 | 102844 | 104766 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BBCNAAEE_5 | 4219036 | 4219833 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| BBCNAAEE_5 | 4220122 | 4221495 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 89.74 | 71.45 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BBCNAAEE_1 | 1.0 | 0.0 | 1.0 |
| BBCNAAEE_2 | 1.0 | 0.0 | 1.0 |
| BBCNAAEE_3 | 1.0 | 0.0 | 1.0 |
| BBCNAAEE_4 | 1.0 | 0.0 | 1.0 |
| BBCNAAEE_5 | 0.0 | 1.0 | 0.0 |
| BBCNAAEE_6 | 0.0 | 1.0 | 0.0 |
| BBCNAAEE_7 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BBCNAAEE_5 | 4385155 | 4393125 | False | Unknown | VOG0572, |
| BBCNAAEE_5 | 4619436 | 4628635 | False | Siphoviridae | VOG6154, |
| BBCNAAEE_5 | 5124847 | 5128565 | False | Unknown | VOG4618, |
Phigaro v2.4.0 (Database: Jan. 2024 release)